RnoEX0073068 @ rn6
Exon Skipping
Gene
ENSRNOG00000045924 | RT1-T24-3
Description
RT1 class I, locus T24, gene 3 [Source:RGD Symbol;Acc:1624211]
Coordinates
chr20:3227087-3230346:+
Coord C1 exon
chr20:3227087-3227172
Coord A exon
chr20:3227499-3228244
Coord C2 exon
chr20:3230050-3230346
Length
746 bp
Sequences
Splice sites
3' ss Seq
AGCACTGACTTTTCTTCCAGATG
3' ss Score
8.85
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGACTGCAAGCTCAGCCGGTGTACCCTGCGGTTCTACAGTGAAACTTGCTGGGCATGGGACAGTCTGCCCAACTGCATGAGACAG
Seq A exon
ATGTCCTGAGTTCAATTTCCAGCAACCACACAGTGACTCACAACCATCTGTAGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGCTACAGTGTACTTATATATAATAAATAAATAAATCTTTAAAAAAAAAACACAAAGAAAGAACCCAGCACTGAAAATGAGCTAAGTTGGTAGAGTGCCTGTCCAGGTATTGGGGGTGGACCCCTCCTACCACTTCCACCTATTACCATAGAGACTTAGAGTCAGAAAACTTTGTAGAAGTTGGGATAAAAGGGGTTCTGGCTGTGGCTCCCAGGCTGAGACTCCCAAGCTACAAGCTCATCTTAGGAGCCTCTAGGAGACTTCTGAGGCTTTGGGTTATAGAATGTTAGAGGGGAGAAGCCTGGGCTCCCCCTCAGCTTTCTTCTACACTGAGGCAGTTGAAATGGAGCTGGGTATGGTATCTCATGCCTGTGTCCTGTAATCATTTGGAGGATGAGTATGAGGATTGCTGAGTTCTAGGCAACCCTGGACACCACCCTGACCCCAGAAAATAACTACTGTATGTATTTCAGGATGTGGGCTGGCTTCTCATCCTTCCAAACAGGGAACACCCACAAAACCTGGAAATCCTGCCTGGGTGTGCATGCACAGACAACTAGATAAGGAAAAGCAAAGCCAGGAGGTGGTGCCCTATGACTTTAATCCTAGGACTGGGAAGGCAGGCGGATCTCTGTGAGTCCAGGCCAGCCTGTTCTACA
Seq C2 exon
GATCACACTCTCTGCACTATTCTTACTCAGCCGTGACAGAGCCGGGCCCAGGAGTTCCTGCATTTTTTGCCAGTGGTTTTGTAGATAACCAGCCCTTCATCCACTATGACAGTAGGAAGATGGAGGCAGAACCTTGTGCTGACTGGCTGAGGGAAAATCCATATTACTTTGATGAGGAGACCCAGGTTTTCACCAATCGGATGAAGATCTTCCAGTTGAGCCTGAGAAACATTCAGCAATACTACAACAGCTCTGGTGACCGGAGTCAGAGAGCAGACGGCTTCCACCAGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045924-'1-2,'1-1,2-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0012913=MHC_I=WD(100=96.0)
Main Inclusion Isoform:
ENSRNOT00000082449fB11965
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCCTGCGGTTCTACAGT
R:
GTCTGCTCTCTGACTCCGGTC
Band lengths:
344-1090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]