RnoEX6061371 @ rn6
Exon Skipping
Gene
ENSRNOG00000045924 | RT1-T24-3
Description
RT1 class I, locus T24, gene 3 [Source:RGD Symbol;Acc:1624211]
Coordinates
chr20:3226313-3230346:+
Coord C1 exon
chr20:3226313-3226442
Coord A exon
chr20:3227087-3227172
Coord C2 exon
chr20:3230050-3230346
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTCCAATGTTGCCTTCACAGTTG
3' ss Score
7
5' ss Seq
CAGGTCCTT
5' ss Score
1.79
Exon sequences
Seq C1 exon
GCAGGCAGTTGCGATTTCTCTAGTTTCTCTCAGGACAGGGAAGACTTACACAATGTCCTGACACCACACCCTGACACTATGTGGGCTCTGATCTTCTGGTTCCTGACCCACCCCCAAGAAACTGGAGCCC
Seq A exon
TTGACTGCAAGCTCAGCCGGTGTACCCTGCGGTTCTACAGTGAAACTTGCTGGGCATGGGACAGTCTGCCCAACTGCATGAGACAG
Seq C2 exon
GATCACACTCTCTGCACTATTCTTACTCAGCCGTGACAGAGCCGGGCCCAGGAGTTCCTGCATTTTTTGCCAGTGGTTTTGTAGATAACCAGCCCTTCATCCACTATGACAGTAGGAAGATGGAGGCAGAACCTTGTGCTGACTGGCTGAGGGAAAATCCATATTACTTTGATGAGGAGACCCAGGTTTTCACCAATCGGATGAAGATCTTCCAGTTGAGCCTGAGAAACATTCAGCAATACTACAACAGCTCTGGTGACCGGAGTCAGAGAGCAGACGGCTTCCACCAGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000045924-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0012913=MHC_I=WD(100=96.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCAGTTGCGATTTCTCT
R:
GCTCTGTCACGGCTGAGTAAG
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]