RnoEX0073403 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21732762-21734986:+
Coord C1 exon
chr3:21732762-21732828
Coord A exon
chr3:21734156-21734177
Coord C2 exon
chr3:21734884-21734986
Length
22 bp
Sequences
Splice sites
3' ss Seq
GGTTTGCTGTTTCATCCCAGAGA
3' ss Score
5.49
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTGCTTCGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAATAGTGATATGCACTTGTTGGATTTG
Seq A exon
AGAAGGCCAAGCAATTGCAAGT
Seq C2 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAGTCATATGTTATTACTGGAAGCTGGAATCCGAAGTCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
PF124733=DUF3694=PD(8.7=75.0)
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
ENSRNOT00000013378fB12025
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGGAAAAGATGTCCGAA
R:
GGACTTCGGATTCCAGCTTCC
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]