RnoINT0123415 @ rn6
Intron Retention
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21732762-21734986:+
Coord C1 exon
chr3:21732762-21732828
Coord A exon
chr3:21732829-21734883
Coord C2 exon
chr3:21734884-21734986
Length
2055 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
GTGTTTACTCTTTCTTTTAGGAG
3' ss Score
10.94
Exon sequences
Seq C1 exon
GTGCTTCGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAATAGTGATATGCACTTGTTGGATTTG
Seq A exon
GTGAGATTTTTTTGTTGTTGTTATGTGTTCTTTTGGTTGTGATTGGTTTTTATTAAAGTCTATAATCTATTTCTACTCTATTAGTATATTATTTTACTTTATCACATTAGACTCAAAACATGTTTTATATATATAAACACTTATATAAAAGTGTTCATGTAAGCTATAAAGCAGTGCACAAAGATGAGGGAATTTTTTTATTCCTGACATGGGATTTACAAGTCTAATCTTGAATATGTAGGTCAGCCTTCATGTCTTGACCTGTGTAGTGGGAATAATATTTTTTATTAGTTAGGATTGATGTAAGAATCAAACTGTCACATCCTTTATTTTACATGTAGGAACCAGGCACAGTGGCACATGCATTTAATCCAAGCACTTGGAAGACAGAGACAGGCAGCTCTGAGTTTGAGGCCAACCTGGACTACAGAGTGAGTTCCAGGACAGCGAGGGCTACACAGAGAAGCCCTGTCTCAAAAATTAAAACAACAACAACAACAAAAAAACCCAAGTAGGAGTAATTGTAGCATATGCCTGTAATATCCCTTGGGAGGTAGAGGCAATCACATAGTATAAGACCTTATTTTAAAAGAAAAAAATCAAATTTAAAAAAATGAAATAAAAAAATGCAAGTAGTAGGAGGTATTATTATTGCTACTATATGAAAATCATTATTTGCAAAACTAAAAATTATAAATTTCACCAATGATTTATATGTATTTATCTTATACATAACTTTAAGAACAGTTATGCAAATAATTGATGTGTTAATCTTAGCTATAATCATTCACATGCATCTCTCTCTGCCTTTAAACAGATCTCTGATACTTGAGCAGCTTTACTCAAGGCTACATACATCAATGCCTTCTCTGTTCCATAGCACTGTTGAGTAGAAGGCTGTTTTCTTCTCTTGAGTTTCAATATAAAATATGAAACAAGATGCCACATGAAAAGCTGTCTACACTATGGATGGTGCCTGTAGTAATAAATGATGCCTTTGATAGTGGATAATCCATAAATCTAATTGACTATAGTGGCCGTGTTTATTTGGCTGTTGACATTGTACATGTCAGGAAGAAAAGACATAGAATTGAATGCTAAACACCATAAATTATTGATAGCATAAAATATTAATAGTTAGAGTCATTATTAATAGCATAGGAGTCCAGAAACTAGTCTTGAATCATGTCCTCCACTAATCAAATTTTGTACTCCAGTTGCTAATATGAAAATTAGGTTTATTTATTTCAGATCATCAAGATAAAAATGAATATAAGGTTTTAGAGGGCCATTCAGATTTCATTAATGGTTTGCTGTTTCATCCCAGAGAAGGCCAAGCAATTGCAAGTGTGAGTAATTACTGTATCTGCAGTGATGAACTTGAAGGAAGGCAAAGAACTCATTGTGTTCTCTCCTCTGGAAGGAGTGTGCTGGCATCCTGAAGAAGTTTTAAGTTGATGGTTGCAGAGGCAAATGGCAGTAGTCTGGTTTTATGCTTTTGCAGCATAATTTGTCCCTTGAATCAGAACAGATACCATTAATGTCAGTACACTGGTACTTCAGAAACACCCTCAAAGTTGAAGTAATTACAGGAAGCAGTTGATTAATTTGGGATATAACATGGTCAGATATACTTTTCACATGGACCACTCTATTTAGTTATTTTCAGGTGGTCTTCAATTAATAGAACTTGGTTGAAACCACTGCTTTTTCTGGTACATGTCAAATCAGTTTCAAATCACTCTGTCTTCATTGATTTTGAGACATTGTCATCCCCTTCTTTCTTAGCATAGAACTCTCCAACAGTGTGCAGTTTGGAAGAGACCACAGCAGTTGTTGTGGGTAACTTGAAACGTAAAGTCTTTGCTGCACTTCAGATTCCTGTATGCGTTCAGAAAATTCCGTGACACACACACATATATAAATATACTATAAACTCTAAAAAACCAGTTCAATCCTTATTAAAGTTATGTATTTGAACTCCTAGTTTTTAAAAGCCTCAAGATGAGGGTTATTTGACTTGGCATTAAGGTCTGTGTTTACTCTTTCTTTTAG
Seq C2 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAGTCATATGTTATTACTGGAAGCTGGAATCCGAAGTCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402:ENSRNOT00000013378:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
NA
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]