GgaINT0126205 @ galGal3
Intron Retention
Gene
ENSGALG00000001225 | RABGAP1
Description
NA
Coordinates
chr17:9545240-9545737:+
Coord C1 exon
chr17:9545240-9545306
Coord A exon
chr17:9545307-9545634
Coord C2 exon
chr17:9545635-9545737
Length
328 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
ATAAGCTTCCTTGTTTCCAGGAG
3' ss Score
7.47
Exon sequences
Seq C1 exon
ATGTTTTGGCCTCCTCCTGAGCCGTGGGAAAGATGTTCGGAGTGGTGACATGCACCTTTTAGATTTG
Seq A exon
GTAAGGGTCTTCTATTAACAAAATCTAGTCACTTGTTGTAACTATGATTGCTTATGATCTCAGGGTAGACAGAAAAGGTTTAGATGCTTAGACACACTTATTGTGTTGATAGTGTACATCATGCTCTTGAGTGTTGCCCTGGAAAATTGGGTTGAATTGTTACCTCTGTTTTTATTTTCAGAAGATTATCTCTGTTATAGGATCATGCAAAATGAACTTCATGTGCCCTTGCCTCACCTCTGCTGGAGCTGTTTTATGTAGCTGAAGCTCTTGTAATATAGAAGTTGCTTTAATTTAAATAAAGATTGATAAGCTTCCTTGTTTCCAG
Seq C2 exon
GAGTCGATGGGTAAAAGTTCTGATGGAAAATCATACGTGATCACTGGTAGCTGGAATCAAAAATCTCCACACTTCCAATTTGTAAATGAAGAAACACCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225:ENSGALT00000001858:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
NA
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]