DreINT0017645 @ danRer10
Intron Retention
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8803476-8805768:-
Coord C1 exon
chr10:8805702-8805768
Coord A exon
chr10:8803579-8805701
Coord C2 exon
chr10:8803476-8803578
Length
2123 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TGCCTCCCCCTGTCTGTCAGGAG
3' ss Score
7.43
Exon sequences
Seq C1 exon
GTGTTTTGGTCTGCTTTTGAGTCCGGGGAAGAACGTGAAGAACAGTGATATGCACCTGCTCGACCTG
Seq A exon
GTATGTGGTGTAAAAACAACACATTTTCTTTCAAATAAATTACAATGTCTTTTTATATGTGCTGTAAAACACATCATATTTTATGAGAAATAAATTACAGGATCATTTTATGTGGTATAAAACATGATATTTTATGAAAATAAATCACAGCATCATTTTATGTGTTAGAATTGCATTGTTGCGAAAGAAAAAACACAGCCACCCTGGTGTTTTAGAATTTATAATGGAATTTAAAAATAGGACATTTTAAATGGTATATATAAATCCAGGCAAAATTATTGGCCCTTCTGTAAAATTGTAATTATTTTTCAGATATTTCTCAAGGACTGTTAAACGGAGAGATTCTTTAAACAAATTTTTAAACAAAACAGTTTTAATATTCCATTTTAATAGTTTTTTTTATATTAAAAAAATTAGCGACACCAAAGCTCTATAAAATGCCGATGTATTACATTAAAAAAGCTAACACAAAGGGCCCTATCATACACCCGGCGTAGTGTGGCGCAAGGCGTGGCGCAGTAGTCTTTTGGTAGTTTCAGCTTGGCGCAAGAGTCGTTTTGAGGCGTTGTGCTACGCTGTTTAAATAGCAAATGCATTAGCGCTCATTTTTGCGCCCATAGGCGTTATGGTCTAAAAAGGAAGGCGTTCTTAGGCGGACCGCTTGCGCATCGCTATTTTGAGAATCTATAATAGATTTTTCATTAGACCAAAACATACCCGGTCTAAACTCCGGCGCAGAGTTGCGCCTCGCTTATGCACTGCTTAATACGCACAAGAGTGCAATAGGCAAATATCTTTAAATGTGAAAAAAATGTAATATTAAGGATATAAATAGGATATAATAAGAATAGATATAGGATATAAATATAAAGGATTAAAATATTACAAAACATATTATTTTCTAGCCTACATAAATATAAAAAAACCACTGCTTTTATGTCTTCTTCATCTCGGGAGGCTTTTTCAGTTCATTCATAACAATTTGCTTTTGTATAATGTTATTATTATTAGCAGTATTATTTATTATATCCATATTTATATTTGTTTTATTAAAAACAAGCTTAGATTTGCCCACCTGTCAGGTTTTACACCATATGGGGCACAGCATTGTTATTTAGGATATAACTTTTTGAGCACATTCTGCTATTATTATTCATTTATTCGTTTGCTGGAAATTAGAACTGAATTTAGAAATAGTTTTGAAACGAATATTTGCGCTTAACAAACAAAAGTATTTATTTATAGACTAATTGATGTCTGTGCGTAAAGGTTTCCCTATCCAAGAGCGAAAGTGAAAGTGATCCATTATCTCTCATTCTCACGCTGTAGATGCTCTGTTTAACAGTTTTCTGTTAAAAAGCTGTTAACTGTTTGCTTGTGAAATGCTAATTTTTTCCACTTAGACTTACTTTGCGTCCTGTAAATAGCGAATGCGCTCTTGGCGCGACGCAGCTGACTCTTAAAGGGAATAAGATTCTAATTGGTTTATTCTCAAAACACACCTATAACTCATTAAGAAAATAAGCTCAACCCTTTTAGACCATTCGCCGCGGCGCAAGGCAGATTTCCTGTCCTTAAATTAGCAAAAACGCGTCCTGACACGCCCTGAAAGTAATTGCGCCCTGCGTTTTGCGCTCTGCGCATGGACCGTCAAAATAGAGCCCAAAGTGTGTAACGTTTCGAGCACATCAGCTCTTCATCAGACTGTATTCATCGCAGCATGTTGCTCTTTTTATACACTTCTGGAACTTAAAAAAATAAATAAAAAAAATACACATTGGTAGGTTACACAACTTACATATTAAAAACGAAAATACAAAAAAAACAATTTAAATAATAATAATAAAAATCCCAAATAAAGAAAAACATAAAAGAATTTAACAAAGACATGCAACAAAATGTAGCCAAAAAACCTTTACTCAAACAACTACTTGGACGTACATAAAGCTCTTCAGAGACCTCTTGGAGTCAACGTACAATGATTCTGGAAAGATGCATCAAGCAGATTCTGGCCAAGTCTGCCCACGGTTGGTTAATTCACCACGAGTGAACTGAAGTGGTGATTCAGTTTGACTTTCTGCTTGTTTTATTCTCTCCTCTCCTTGCCTCCCCCTGTCTGTCAG
Seq C2 exon
GAGTCAATGGGCAAAAGCTCTGATGGGAAATCTTACATCATCACAGGGAGCTGGAATCCCAACACTCCTCAGTTTCAAGCTGTGAATGAGGAGACGCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967:ENSDART00000167821:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
NA
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]