BtaINT0121573 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94153055-94153840:+
Coord C1 exon
chr11:94153055-94153121
Coord A exon
chr11:94153122-94153737
Coord C2 exon
chr11:94153738-94153840
Length
616 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
GTTGTTATTCTTTTCTTTAGGAA
3' ss Score
9.57
Exon sequences
Seq C1 exon
ATGTTTTGGTCTTCTCCTTAGCCCAGGGAAAGATGTACGAAATAGTGACATGCACTTGTTAGATTTG
Seq A exon
GTAAGGATAGCTTTTTTTTTTTTAAGTTTGTATGCTATCTCCTCTATAAAGATTGTTACACCAAATCTAATGTTAAAACACATTTATGAAGCAATAAGCAAAGATAAGGGTATTTCCTCCTTGCTTTTTACCAGTCTGACCTTATACCTACTTAGTCTCAGTTTCTTGACTGCAATAGTGTAGGGTTGATGTTGGAGTCAAAGACATTTTGTCAGAGAGTTGTTTGCAGACTGTTATGAGCTTTAGAAAAGTATGCAGTATATATATGATTGCTATTAAATGAAAATCTTTATTTTAATAACTAAAATTTATGTAGTAATTGTTCACTTGACAGAAGAATTCAACATAGGTGTAAGTAGTAAATTTTCCTGATGTCTGTACAGTTTGATATGATTTGTAAGCATTCACTTTATATATAACTTCAGGAGCAGTTGCATAAATAATTGGCACATTTTTAGCTGTAATCCATATATACTCTTGACTTTTTGTGTGTATATATATATATATATGATCGTATTTTATAGTCTTATATTTTTACAACTTTTTTTTAAGGCAACAGAATGAGGATTAGCTGTTATTTTTTTGGCATTAATGTTGTTGTTATTCTTTTCTTTAG
Seq C2 exon
GAATCTATGGGCAAAAGTTCAGATGGAAAGTCCTATGTTATTACTGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172:ENSBTAT00000061025:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
NA
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development