MmuINT0130784 @ mm10
Intron Retention
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37487512-37489833:+
Coord C1 exon
chr2:37487512-37487578
Coord A exon
chr2:37487579-37489730
Coord C2 exon
chr2:37489731-37489833
Length
2152 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
3' ss Seq
TTATGTTTACTCTTCCTTAGGAG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTGCTTTGGTCTTCTCCTTAGCCCAGGAAAAGATGTCCGAAACAGTGATATGCACTTGCTGGATTTG
Seq A exon
GTGAGATTTTGTTGTTGTTGTTGTTGTGGGCTCTTTTGGTTGTGGTTGGTTTTTATTAGAAATCTATAAACTACTTCTATCTTGTTTGTCTATTGATTTACCTTATCACATTAGACTCAAAACATGTCTTATATATAAACACTTATATAAAAGTGTTTGTGTAAGCAACAAAGCAATGCACAAAGGGACATGGGAGTTACAAGTCTGACCTTGAATGTGTAGGTCAGCCTTGGTGTCTTGACCTGTGTAGTGGGAATAATATTTTTTGTCTACTTATGAGGTAGGATTGATGTAAGAATCAAACTGTCAGATCCTTTACTTTACACGTAGGGACTAGGCACAGTGGCACATACACTTGGGACGCAGAGGCAGGCAGATCTCTGAGTTTGAGGCTAGCTTGGTCTGTACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGACTCAAAATCAAAACAAAACACCACCACCAACAACAAAAGAACCCAAGTAGGAGTAATTGTAGCATAAGCCTATAAGATCCCTTGGGAGGTAGGGGCAATCACACAAGACCTTATTTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAAATGAAAATAGTCGGGCGTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGGGGATTTCTGAGTTCGAGGCCAGCCTGGTCTATAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAGAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAATAGTAGGAGGTATTATTTTTGCAAGTATATGAAAGTCATTATTTATAAAACTAAAAGTTATAAATTTCACCAATGCTTTATGTACATTTATCTTACATATAACTTTAGAACCAGTTATGCAAGTAATTGATGTGCTAATCTTAACTGAAATCATTCAAGTGCTCCTCTCTCTGCCTTTAAACAATCTCTGATACTTGAGCATCTTTACTCAAGGCTACATACATCAGTGACGTCTCTGTTTCACACACTGTTCAGTAGAAGGCTGTTTTGTTGTCTTTTGAGTTTCAACATAAATTACTAAGCAAGATGCCACATGAAAAGCTGTCTACACTATGAATGATATCCCTTATATCAGAGCAATTTATCCCTTATATTAGAGTACATGCCTTCTATACTGGAGAATCAATAAATCTAATCAACTATAGCGGCTGTGTTTATTTGGCTGTTGACAGTGTTCATGTCCAGAAGAAAAAACACGGAAAGAGTTGAATACTAAACACTATACATTATTTCATCTTAGAATCATTATTAATAGCATAGGAGTCAGAAACTAGCCTTGAATCATGTCCTCCACTAATCAAATTTTGTACTTCAGTTGCTAATATGAAAATTAGGTTTATTTATTTCAGATCATCAAGATAAAAATGAATATAAGGTTTTAGAGGGCCATTCAGATTTCATTAATGGTTTGCTGTTTCATCCCAGAGAAGGCCAAGCAATTGCAAGTGTGAGTAATTACTGTATCTGCAGTGATGAACTTGGAAGGAAGACAAACAACTCATTGTATTCTCTCCTCTGGAATGAGAGTGCTGGCATCCTGAGAGGAGACTTTTAAGTTGATGGTTGCAGAGGCAAATGCAATGGTCTGGTTTTATGCTTTTGCAGCAGAATTTATCCCTTATATCAGAGCACTGGTGCTTCATAAACACCGTCAAAGTTGCTGTTATAGGAAGCAGTTGTTTAATTTGGGATACAACGTGGTCAGTTAGACTTTTCACATGGACCCAGTCTAGTTAGTCATTGTCAGGTGATCTGCAATTACTAGAACTTGGTTGCAACCACTGGTCATCATTGATTATGAGACACTGTCATCCCCTTCTTTCCTAGCAAAGAACAGTAGTTGTTGTGGGTAACATGAAACTTAAAGTCTTTGCTGCAGTGTAGATTCCTGTAGACTTCCATCTTAGGTAGGTAGGTAGGTAGGTAGGTAGATAGTGTTATTATATACACTATAAACTTGAAAAACTCAGTACAATCCTTATTAACGTTGTGTGTTCTGAAATCCTAGTTTTGAAAAGCCTCAAGATGAGGGTGAGCTGCCTTTAGCATTAAGGTTTATGTTTACTCTTCCTTAG
Seq C2 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAATCATATGTTATTACTGGAAGCTGGAACCCGAAATCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437:ENSMUST00000066055:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(16.5=100)
A:
NA
C2:
PF124733=DUF3694=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types