RnoEX0074219 @ rn6
Exon Skipping
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74861060-74875331:-
Coord C1 exon
chr13:74875231-74875331
Coord A exon
chr13:74862516-74862641
Coord C2 exon
chr13:74861060-74861166
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGAACTGTCTTCTACTGCAGGCA
3' ss Score
7.44
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
TTTCTGGCTGGAGAATGAGTCTCCTTTCCCCTGGTGATGTGTCGGAGTGGTTGGATAGTGGCACGGAAGAGGAGAAGAGCCTTCTGTCATTTCTGGGTAAG
Seq A exon
GCATAGAAGCTGCGGCATCACCCTCTCAGTCATTAGGAATATTGTAATTTGGCTAATATCTTAATGGTCAGGATGCCACAAGGAGATGAAAAGGAGACCTGTATCCAACATGCAAACAATGATAGG
Seq C2 exon
AGGTACCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917-'11-9,'11-8,12-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.267 C2=0.742
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=FE(15.2=100)
Main Inclusion Isoform:
ENSRNOT00000089062fB12182
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGCTGGAGAATGAGTCT
R:
ACTTTAAAAGGAGAGGTATTCGCAGT
Band lengths:
203-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]