RnoEX0074223 @ rn6
Exon Skipping
Gene
ENSRNOG00000004917 | Rasal2
Description
RAS protein activator like 2 [Source:RGD Symbol;Acc:1307566]
Coordinates
chr13:74829110-74893275:-
Coord C1 exon
chr13:74893175-74893275
Coord A exon
chr13:74861060-74861166
Coord C2 exon
chr13:74829110-74829219
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATTTCCTCCACTTTTCCAGAGG
3' ss Score
7.2
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ACCTACCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACCATATCTGATTTCAGATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
AGGTACCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
Seq C2 exon
GGCTTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAACACAAGCTTTCGACTTCCATCCCTCCGCAATGCAGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004917-'8-12,'8-9,15-12
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.742 C2=0.568
Domain overlap (PFAM):
C1:
NA
A:
PF0016924=PH=FE(15.2=100)
C2:
PF0016924=PH=PU(30.5=97.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTCTGCCTCCTGAGTG
R:
CTGTCGTCTGCATTGCGGAG
Band lengths:
210-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]