MmuEX6028508 @ mm10
Exon Skipping
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:157192747-157286854:-
Coord C1 exon
chr1:157286731-157286854
Coord A exon
chr1:157230039-157230145
Coord C2 exon
chr1:157192747-157192856
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCTACTTTTCCAGAGG
3' ss Score
8.54
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGCCTGTGGAAGGACAGGATCAACAGACAGATTCCACCAAAGGGCGCTGTCTGAGGAGAACTGTCAGTGTTCCTTCAGAGGGTCAGTTTCCGGAGTACCCACAGGAGGGCACCACTAAACTAG
Seq A exon
AGGTGCCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
Seq C2 exon
GGATTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAACACAAGCTTTCGGCTTCCATCCCTTCGCAATGCAGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565-'17-20,'17-17,21-20=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=0.873 C2=0.639
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(17.7=100)
A:
PF0016924=PH=FE(15.2=100)
C2:
PF0016924=PH=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGGACAGGATCAACAG
R:
GTCATCTGCATTGCGAAGGGA
Band lengths:
227-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types