HsaEX6035125 @ hg19
Exon Skipping
Gene
ENSG00000075391 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:9874]
Coordinates
chr1:178269127-178389755:+
Coord C1 exon
chr1:178269127-178269253
Coord A exon
chr1:178359235-178359341
Coord C2 exon
chr1:178389646-178389755
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACTTTCCTCCTTTTTTCCAGAGG
3' ss Score
9.42
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATACCTGTGGAAGGGGGACAGGAGCAGCAGACAGATTCCACCAAAGGGCGATGCCTGAGGAGAACTGTCAGTGTCCCTTCCGAGGGTCAGTTTCCCGAGTACCCACCAGAGGGCGCCACTAAACTGG
Seq A exon
AGGTACCAGCAGAAAGGTCCCCTCGTAGACGGAGTATCTCAGGGACCAGTACATCAGAGAAACCCAACTCCATGGACACTGCAAATACCTCACCCTTCAAAGTACCA
Seq C2 exon
GGATTCTTCAGCAAGCGCCTGAAAGGCTCCATCAAGAGGACCAAAAGCCAGTCAAAGCTTGACAGAAACACGAGCTTTCGGCTTCCATCCCTTCGCAGTACAGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075391-'9-12,'9-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.977 A=0.889 C2=0.676
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(18.0=100)
A:
PF0016924=PH=FE(15.0=100)
C2:
PF0016924=PH=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGAAGGGGGACAG
R:
CTGTCATCTGTACTGCGAAGGG
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)