DreEX0060983 @ danRer10
Exon Skipping
Gene
ENSDARG00000036257 | rasal2
Description
RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
Coordinates
chr2:35812930-35843281:+
Coord C1 exon
chr2:35812930-35813056
Coord A exon
chr2:35836406-35836515
Coord C2 exon
chr2:35843169-35843281
Length
110 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTCCTCTCTCATAGCGG
3' ss Score
10.67
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGCCGTCAGAGGTGCATGAAAGCCCCTCAGCATCCTCTTCGAAGGGCCGCAGTTTGAGGCGGACAGTCAGTGTGCCTTCTGAAGGACCGTTCCCAGACTTCCCACCAGAGGGAGCCTCCATGATAG
Seq A exon
CGGAAGCGTCCGCGGAGCGCTCTCCCAGACGGAGGAGCATATCAGGGCTAGGCAGCTCAGAGAAGAACATTTCCATCGATGGCCCCAACTCATCTCCCTTCAAAGTGCCT
Seq C2 exon
GGTTTTTTAAGTAAACGACTGAAAGGATCCATCAAAAGGACGAAGAGCCAGACTAAGCTGGACCGCAACACAAGTTTCAGACTCCCATCGCTGCGACCAACAGAAAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036257-'3-7,'3-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.804 C2=0.678
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(16.7=100)
A:
PF0016924=PH=FE(14.3=100)
C2:
PF0016924=PH=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTCAGAGGTGCATGAAAG
R:
CATTTTCTGTTGGTCGCAGCG
Band lengths:
234-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]