MmuEX6028508 @ mm9
Exon Skipping
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:159122878-159216985:-
Coord C1 exon
chr1:159216862-159216985
Coord A exon
chr1:159160170-159160276
Coord C2 exon
chr1:159122878-159122987
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATTTCTTCTACTTTTCCAGAGG
3' ss Score
8.54
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATGCCTGTGGAAGGACAGGATCAACAGACAGATTCCACCAAAGGGCGCTGTCTGAGGAGAACTGTCAGTGTTCCTTCAGAGGGTCAGTTTCCGGAGTACCCACAGGAGGGCACCACTAAACTAG
Seq A exon
AGGTGCCAGCAGAAAGGTCCCCCCGCAGACGGAGCATCTCAGGGACCAGCACATCAGAGAAACCCAACTCCATGGACACTGCGAATACCTCTCCTTTTAAAGTACCA
Seq C2 exon
GGATTCTTCAGCAAGCGCCTGAAAGGTTCCATCAAGAGGACCAAAAGCCAGTCGAAGCTTGACAGAAACACAAGCTTTCGGCTTCCATCCCTTCGCAATGCAGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565-'3-8,'3-6,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.971 A=0.858 C2=0.633
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(17.7=100)
A:
PF0016924=PH=FE(15.2=100)
C2:
PF0016924=PH=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGGACAGGATCAACAG
R:
GTCATCTGCATTGCGAAGGGA
Band lengths:
227-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: