GgaEX0005775 @ galGal4
Exon Skipping
Gene
ENSGALG00000004323 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr8:6462163-6505795:-
Coord C1 exon
chr8:6505672-6505795
Coord A exon
chr8:6473292-6473398
Coord C2 exon
chr8:6462163-6462272
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTGTTCCTCCTTAGAGG
3' ss Score
10.38
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GTGCCCACCGAGGGGTTGCAGGAGCCGCAGGATGCAACCAAAGGCCGCTGTCTGCGCCGCACGGTGAGCGTGCCCTCCGAGGGCCAGTTCCCCGAGTACCCACCAGATGGGGCCGCCAAGCTGG
Seq A exon
AGGTCCCGGCAGAGAGATCTCCTCGCAGACGGAGCATCTCTGGGACCAGCACATCTGAGAAAACCAACTCCATGGATGCTGCAAATACCTCTCCTTTCAAAGTATCG
Seq C2 exon
GGCTTCTTCAGTAAACGTCTGAAAGGGTCCATCAAGAGGACAAAGAGTCAGTCAAAGCTGGACAGGAACACAAGTTTCCGCCTCCCATCCCTCCGCAATGCTGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323-'7-9,'7-5,19-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.778 C2=0.676
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(18.2=100)
A:
PF0016924=PH=FE(15.6=100)
C2:
PF0016924=PH=FE(16.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGGTTGCAGGAGCC
R:
CTGTCATCAGCATTGCGGAGG
Band lengths:
226-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]