BtaEX6069986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015537 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr16:61133342-61255058:+
Coord C1 exon
chr16:61133342-61133468
Coord A exon
chr16:61215816-61215922
Coord C2 exon
chr16:61254949-61255058
Length
107 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTTCTCATCCAGAGG
3' ss Score
8.9
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATACCTGTGGACGGAGGACAAGAACAGCAGGCGGATTCCACCAAAGGGCGATGCCTACGGAGAACTGTCAGTGTTCCTTCCGAGGGTCAGTTTCCTGAATACCCACCAGAGGGCGCCACTAAACTGG
Seq A exon
AGGTGCCAGCAGAAAGGTCCCCACGCAGACGGAGTATCTCAGGGACCACTACATCTGAGAAACCCAACTCTATGGACACTGCGAATACCTCACCCTTCAAAGTACCA
Seq C2 exon
GGGTTCTTCAGCAAGCGCCTAAAAGGCTCCATCAAGAGGACCAAAAGCCAGTCAAAGCTTGACCGAAACACGAGCTTTCGGCTTCCCTCTCTTCGCAATACCGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015537-'2-7,'2-5,7-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.167 C2=0.459
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0016924=PH=PU(30.5=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGTGGACGGAGGACAAG
R:
GTCATCGGTATTGCGAAGAGAGG
Band lengths:
234-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]