RnoEX0075367 @ rn6
Exon Skipping
Gene
ENSRNOG00000011321 | Rftn1
Description
raftlin lipid raft linker 1 [Source:RGD Symbol;Acc:1563347]
Coordinates
chr9:12740885-12832779:+
Coord C1 exon
chr9:12740885-12741029
Coord A exon
chr9:12761408-12761564
Coord C2 exon
chr9:12832593-12832779
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTTTCCCTGTTGTAGACA
3' ss Score
8.56
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CGGCCGCGCCCCGCGCTCTGCCCCCACCCCCGGGGCCGCGTCGTCCGCGCGCCGCCCTGCTCTGCATGGCACAAACTTTCATCCCGGGACGCAGCACGCTGTCTCCGGGAACCCGCGCCAGGGTCGCCGCTGCTGGTCGCCTAAG
Seq A exon
ACAGCTGTCGAGATGGGTTGCAGTTTGAACAAGCTGGAGAAACGTGAAGAGAAGCGGCCTGGTAACATTTACTCTACTCTGAAGAGACCTCAGGTGGAGACCAAGATAGATGTGACCTATGAATACTGCTTTCTAGAGTTCACCACCCTGACTGCCG
Seq C2 exon
CGGAGCTGCCGAGATCCTCAGCCACAAGGTTAGCTTCTCTGCGGGATCTGCCTGACCAGCTGCTGGAGCTGTACCAGCAGGGCTTCTCGCTGGCCGCCCTGCACCCGTTTGTGCAGCCGACGCGCAGGCAAGAGAAGATACCCCTGGAGCACATCTTCAGGGCCATCCTGGTCAAGAAAACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011321-'0-3,'0-0,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.109 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF152501=Raftlin=PU(13.7=98.0)
C2:
PF152501=Raftlin=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAACTTTCATCCCGGGA
R:
GATGGCCCTGAAGATGTGCTC
Band lengths:
244-401
Functional annotations
There are 1 annotated functions for this event
PMID: 12805216
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, colocalization, mutation analysis, western blot. ELM ID: ELMI002323; ELM sequence: MGCGLNK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]