GgaEX6019336 @ galGal3
Exon Skipping
Gene
ENSGALG00000011241 | RFTN1
Description
NA
Coordinates
chr2:34331651-34369674:-
Coord C1 exon
chr2:34369606-34369674
Coord A exon
chr2:34359926-34360081
Coord C2 exon
chr2:34331651-34331837
Length
156 bp
Sequences
Splice sites
3' ss Seq
TCCTTGCCTGTTTGTATCAGGAA
3' ss Score
8.24
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
CTGGCCGTCTCCGCCCGCCGGGCATCCTTCAGCACCGCCGGGCTGCGTCTCGCCCGCCGCCTGTCCCAG
Seq A exon
GAACTGCTGAAATGGGTTGTGGATTGAACAAACTAGAGAAGCATGATGAAAAACGGCCTGGTAACATCTATTCAACGTTGAAGAGGCCCCAGGTAGAAACCAAGATAGATGTCAGCTATGAATATCGATTCTTGGACTTCACGACACTAAATGATG
Seq C2 exon
CTGAGCTACCAGGATCATCTGCAATCAAGCTCTCCTCTTTGCGTGATCTTCCAGCTCAGCTGCAAGAATTATACCAGCAGGGCTTCGTCTTGGCTGCTGTCCACCCCTTCGTGCAGCCAACTGATGAAAAAGAGAAAACTCCCCAGGAACAAATCTTCAGGGCTGTGCTTATCAAGAAAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011241-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.265 C2=0.111
Domain overlap (PFAM):
C1:
NA
A:
PF152501=Raftlin=PU(9.7=98.0)
C2:
PF152501=Raftlin=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGCATCCTTCAGCAC
R:
TGTTTTCTTGATAAGCACAGCCCT
Band lengths:
234-390
Functional annotations
There are 1 annotated functions for this event
PMID: 12805216
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: classical fluorescence spectroscopy, colocalization, mutation analysis, western blot. ELM ID: ELMI002323; ELM sequence: MGCGLNK; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]