RnoEX0076577 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48574660-48579183:+
Coord C1 exon
chr5:48574660-48574769
Coord A exon
chr5:48578016-48578202
Coord C2 exon
chr5:48579080-48579183
Length
187 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTTTCTGATATCCAGGAA
3' ss Score
7.58
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAGATTCTTACCTCTAAAGACAATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGTCTGAAG
Seq A exon
GAAGAGAGATATACGTGCAGAGGGCAGAGGTTGATGTCTGATGACTTCCTCTGTCAGTCTCCAACTTATTTTTTTGAGACAATGTCCTTCACTGAACCTGGAGCTTGCTGCTTTGGCTAGACTTAGCTGGACAACAAAACCCCGAGGAGGATCGTCCTGTCTCCGCCTCCCAGCTCAGGGAGTACAG
Seq C2 exon
GTTAAAATGAGCTTGTTGGTGGATCTGACAAATACTTCAAGGTTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAGTATATCAAACTTCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PU(11.2=32.4)
A:
NO
C2:
PF0078215=DSPc=FE(25.6=100)
Main Inclusion Isoform:
ENSRNOT00000091827fB12596
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACCTCTAAAGACAATGCTGGG
R:
ACTTGATTCCTTCTTTTTCTATGTCA
Band lengths:
186-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]