RnoEX0076576 @ rn6
Exon Skipping
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48561339-48579183:+
Coord C1 exon
chr5:48561339-48561513
Coord A exon
chr5:48574660-48574769
Coord C2 exon
chr5:48579080-48579183
Length
110 bp
Sequences
Splice sites
3' ss Seq
AAATTATTATTAATGTTTAGGAA
3' ss Score
5.85
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CGCGGAGTCGAACCTGAATGAAAGTGGCGCGCCGCTGAGGACCCGGGTGGAGCTGCTGCCGTTGGGGTCTGGGCTGGCTTGCTAAGGAGCTGTCGGCGAGGCGGCGTAGACATGGCTTACAACAAGATCCCGCCTCGGTGGCTGAACTGTCCGAGGCGCGGCCAGCCGGTGGCAG
Seq A exon
GAAGATTCTTACCTCTAAAGACAATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGTCTGAAG
Seq C2 exon
GTTAAAATGAGCTTGTTGGTGGATCTGACAAATACTTCAAGGTTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAGTATATCAAACTTCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(9.0=41.4)
C2:
PF0078215=DSPc=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGTCGAACCTGAATGAA
R:
TCCTTCTTTTTCTATGTCATTTCTGT
Band lengths:
249-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]