MmuEX0040217 @ mm9
Exon Skipping
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33397286-33411952:+
Coord C1 exon
chr4:33397286-33397499
Coord A exon
chr4:33407494-33407603
Coord C2 exon
chr4:33411849-33411952
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTATCCACCTTAATGTTTAGGAA
3' ss Score
8.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGGGCGGAAGTCGCAGTGCATTGTGGGTTCGCCGGGAGCCGCGGAGTCGAACCTGAATGAAAGTGGCGCGCCGCTGAGGACCCGGGTAGAGCTGCTGCCGTTGGGGTCCGGGCTGGTTTGCTGTGGAGCTATCGGCGAGGCGGCACAGACATGGCTTACAACAAGATCCCGCCGCGGTGGCTGAACTGTCCGCGGCGCGGTCAGCCGGTGGCAG
Seq A exon
GAAGATTCTTACCTCTGAAGACGATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGCCTGAAG
Seq C2 exon
GTTAAAATGAGCTTGTTGGTGGATCTGACAAATACTTCAAGGTTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAGTATATCAAACTTCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-'0-4,'0-0,1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(9.0=32.4)
C2:
PF0078215=DSPc=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGTCGCAGTGCATTGT
R:
TTTGTCAGATCCACCAACAAGCT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: