BtaEX0030801 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002725 | RNGTT
Description
Bos taurus RNA guanylyltransferase and 5'-phosphatase (RNGTT), mRNA. [Source:RefSeq mRNA;Acc:NM_001046085]
Coordinates
chr9:61993719-62014919:+
Coord C1 exon
chr9:61993719-61993966
Coord A exon
chr9:62006873-62006982
Coord C2 exon
chr9:62014816-62014919
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCTATCTTCATGTTATTTAGGAA
3' ss Score
7.63
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCGCCTAGAGTTGAGCCTGAATGGAAGTGGCGCGCTGCCGCTGACGTTACCCGCGTCCGAGCGGCTAGGGTTCGGACGCCGTCCGGGATTCGGGTACCTCAGACCTGTGGTTCAGAGCGGACCGCGAGGAGGCGGCGGCTAGGCCGAGCGTTGGTGGAGGGGCGGCTGTGCGCGGCCCCAAGACATGGCTCACAACAAGATCCCGCCGCGGTGGCTAAACTGTCCGCGGCGCGGCCAGCCGGTGGCAG
Seq A exon
GAAGATTCTTACCTCTGAAAACAATGTTAGGACCAAGATATGACAGTCAAGTTGCTGAAGAAAATCGATTCCATCCTAGTATGCTTTCAAATTATCTGAAGAGTCTGAAG
Seq C2 exon
GTTAAAATGGGCTTGTTGGTAGACCTGACAAATACTTCAAGATTCTATGACAGAAATGACATAGAAAAAGAAGGAATCAAATATATAAAACTTCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002725_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(8.3=29.7)
C2:
PF0078215=DSPc=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGAAGTGGCGCGCT
R:
TCAGGTCTACCAACAAGCCCA
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development