GgaEX1049779 @ galGal4
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr3:75254913-75267378:+
Coord C1 exon
chr3:75254913-75255524
Coord A exon
chr3:75259451-75259560
Coord C2 exon
chr3:75267275-75267378
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCCAAATTTGTGTTTCATAGGGA
3' ss Score
7.21
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TCGGCCGCCTCTGGCGCCCCCTGGCGGCCGGCTGCTGCTCGATCCGCGCCCGGAGCGCTGCCTGGGGCGGCGTCCTATAGCGCTGCTCTGAGCAGCTGGGGAAAATAAGAGAAGCGAGGCGTCCGTAGAACCGCAGGGCCACAGGACGGTTTGGGGACGGAGGGCCCTTAACAACCCTTCAGTGTCACCGCTGCCGCGGACTGCCTGCCATCCGACGGCTCCCGACCGCCCGGCGGACCCGGCATGGCGGCGCCGGCAGCGCGCACCCGGAAGCGGAAGCGGCCGCGGAGCACTGCGGGCCGGCGGCCGAGGCGGAGCTGGGTCTGAATGAAGGCGCCGCGGGCCCGGGGCCGCGGGCGCCTGTGAGCGCCGAGGGGCCTCTCCCGCTCGCCCCTTCCTCCCTCTCTCCCCCTCTGCCCTCGCCCCGGGCCCGGCCATGTCCTACAACAAGATCCCGCCGCGCTGGCTCCACTGCCCCAGGAGGGGACAGCCCGTGGCAG
Seq A exon
GGAAGTTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
Seq C2 exon
GTTAAAATGGGTTTGCTGGTCGACTTGACCAACACCAATAGATTCTATGATAGGAACGATATACAGAAAGAGGGGATTAAATATATAAAGCTCCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(9.0=32.4)
C2:
PF0078215=DSPc=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGTCTGAATGAAGGCGC
R:
CCCCTCTTTCTGTATATCGTTCCT
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]