DreEX6043517 @ danRer10
Exon Skipping
Gene
ENSDARG00000032261 | rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
Coordinates
chr20:1094968-1099230:-
Coord C1 exon
chr20:1098904-1099230
Coord A exon
chr20:1095566-1095675
Coord C2 exon
chr20:1094968-1095071
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGATGCTTTTTCTCCACAGGTA
3' ss Score
12.42
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTTTCAGCGAGTAACGCACTGAACCGCGGGACAACGTGCAGAAATACTGTTTACCGGAGAGAAGCGGACGCCTCATGGAGCTCATCTCATAAACCCGAGTCGAAGAGCAGCTTTTCACAGCGCCAAGTTCTTAATAAAGTTGTGACGCGCTCGTTTGGACTGGGCCCAGGCAGCGGGTCGCCGTAGATCCTCCAGCCGCCCGACAAGGCTCGAGCCCCCGGCAGCCGACCGCGGACTTCCCGCTCGGGAATCGGCGGGAGAATGTCGCAAACCGGAGCGCCTCCCCGCTGGAGGAACTGTCCCAGGAGAGGACAACCTGTGGCCG
Seq A exon
GTAAATTTCTACCCATGAAAACCATGCTTGGGCCGCGCTATGATGATAAAGTCCCTGAGGAGAACCGGTTTCATCCCAGCATGCTGTCCAACTATCTGAAAAGCTTAAAG
Seq C2 exon
GTGAAGATGGGTTTACTGGTGGACCTGACCAACACCACCCGCTTCTATGATCGAGCAGACATCGAAAAAGAAGGAATAAAATACGTGAAACTTTCCTGCAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032261-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.636 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(8.3=29.7)
C2:
PF0078215=DSPc=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTCACAGCGCCAAGTTC
R:
TCAGGTCCACCAGTAAACCCA
Band lengths:
244-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]