GgaEX1049779 @ galGal3
Exon Skipping
Gene
ENSGALG00000015787 | RNGTT
Description
NA
Coordinates
chr3:78564017-78575992:+
Coord C1 exon
chr3:78564017-78564138
Coord A exon
chr3:78568065-78568174
Coord C2 exon
chr3:78575889-78575992
Length
110 bp
Sequences
Splice sites
3' ss Seq
GCCAAATTTGTGTTTCATAGGGA
3' ss Score
7.21
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CTCTCCCGCTCGCCCCTTCCTCCCTCTCTCCCCCTCTGCCCTCGCCCCGGGCCCGGCCATGTCCTACAACAAGATCCCGCCGCGCTGGCTCCACTGCCCCAGGAGGGGACAGCCCGTGGCAG
Seq A exon
GGAAGTTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
Seq C2 exon
GTTAAAATGGGTTTGCTGGTCGACTTGACCAACACCAATAGATTCTATGATAGGAACGATATACAGAAAGAGGGGATTAAATATATAAAGCTCCAGTGTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.007
Domain overlap (PFAM):
C1:
NO
A:
PF0078215=DSPc=PU(9.0=32.4)
C2:
PF0078215=DSPc=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCCCTTCCTCCCTC
R:
TTAATCCCCTCTTTCTGTATATCGT
Band lengths:
194-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]