RnoALTA0034237-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48561339-48574769:+
Coord C1 exon
chr5:48561339-48561513
Coord A exon
chr5:48574660-48574663
Coord C2 exon
chr5:48574664-48574769
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
AAATTATTATTAATGTTTAGGAA
3' ss Score
5.85
Exon sequences
Seq C1 exon
CGCGGAGTCGAACCTGAATGAAAGTGGCGCGCCGCTGAGGACCCGGGTGGAGCTGCTGCCGTTGGGGTCTGGGCTGGCTTGCTAAGGAGCTGTCGGCGAGGCGGCGTAGACATGGCTTACAACAAGATCCCGCCTCGGTGGCTGAACTGTCCGAGGCGCGGCCAGCCGGTGGCAG
Seq A exon
GAAG
Seq C2 exon
ATTCTTACCTCTAAAGACAATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(9.0=41.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTACAACAAGATCCCGC
R:
TGGCCCCAGCATTGTCTTTAG
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]