MmuALTA0015417-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000028274 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:MGI Symbol;Acc:MGI:1329041]
Coordinates
chr4:33397286-33407603:+
Coord C1 exon
chr4:33397286-33397499
Coord A exon
chr4:33407494-33407497
Coord C2 exon
chr4:33407498-33407603
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TTATCCACCTTAATGTTTAGGAA
3' ss Score
8.13
Exon sequences
Seq C1 exon
GGGGCGGAAGTCGCAGTGCATTGTGGGTTCGCCGGGAGCCGCGGAGTCGAACCTGAATGAAAGTGGCGCGCCGCTGAGGACCCGGGTAGAGCTGCTGCCGTTGGGGTCCGGGCTGGTTTGCTGTGGAGCTATCGGCGAGGCGGCACAGACATGGCTTACAACAAGATCCCGCCGCGGTGGCTGAACTGTCCGCGGCGCGGTCAGCCGGTGGCAG
Seq A exon
GAAG
Seq C2 exon
ATTCTTACCTCTGAAGACGATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028274-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(9.0=32.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTACAACAAGATCCCGC
R:
CATATCTTGGCCCCAGCATCG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: