GgaALTA1027386-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015787 | RNGTT
Description
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:HGNC:10073]
Coordinates
chr3:75254913-75259560:+
Coord C1 exon
chr3:75254913-75255524
Coord A exon
chr3:75259451-75259455
Coord C2 exon
chr3:75259456-75259560
Length
5 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCAAATTTGTGTTTCATAGGGA
3' ss Score
7.21
Exon sequences
Seq C1 exon
TCGGCCGCCTCTGGCGCCCCCTGGCGGCCGGCTGCTGCTCGATCCGCGCCCGGAGCGCTGCCTGGGGCGGCGTCCTATAGCGCTGCTCTGAGCAGCTGGGGAAAATAAGAGAAGCGAGGCGTCCGTAGAACCGCAGGGCCACAGGACGGTTTGGGGACGGAGGGCCCTTAACAACCCTTCAGTGTCACCGCTGCCGCGGACTGCCTGCCATCCGACGGCTCCCGACCGCCCGGCGGACCCGGCATGGCGGCGCCGGCAGCGCGCACCCGGAAGCGGAAGCGGCCGCGGAGCACTGCGGGCCGGCGGCCGAGGCGGAGCTGGGTCTGAATGAAGGCGCCGCGGGCCCGGGGCCGCGGGCGCCTGTGAGCGCCGAGGGGCCTCTCCCGCTCGCCCCTTCCTCCCTCTCTCCCCCTCTGCCCTCGCCCCGGGCCCGGCCATGTCCTACAACAAGATCCCGCCGCGCTGGCTCCACTGCCCCAGGAGGGGACAGCCCGTGGCAG
Seq A exon
GGAAG
Seq C2 exon
TTTTTACCTTTGAAGACAATGTTAGGACCAAGATACGATGATCAGGTTGCAGAAGAAAATCGTTTTCACCCAAGTATGTTGTCCAACTACTTAAAGAGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015787-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(9.0=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTACAACAAGATCCCGCC
R:
CCTGATCATCGTATCTTGGTCCT
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]