RnoALTD0025924-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007867 | Rngtt
Description
RNA guanylyltransferase and 5'-phosphatase [Source:RGD Symbol;Acc:1311410]
Coordinates
chr5:48561409-48574769:+
Coord C1 exon
chr5:48561409-48561509
Coord A exon
chr5:48561510-48561513
Coord C2 exon
chr5:48574660-48574769
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
AAATTATTATTAATGTTTAGGAA
3' ss Score
5.85
Exon sequences
Seq C1 exon
GGGCTGGCTTGCTAAGGAGCTGTCGGCGAGGCGGCGTAGACATGGCTTACAACAAGATCCCGCCTCGGTGGCTGAACTGTCCGAGGCGCGGCCAGCCGGTG
Seq A exon
GCAG
Seq C2 exon
GAAGATTCTTACCTCTAAAGACAATGCTGGGGCCAAGATATGATAGTCAAGTTGCTGAAGAAAACCGGTTCCATCCCAGTATGCTCTCAAATTATCTAAAGAGTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007867-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078215=DSPc=PU(11.2=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTACAACAAGATCCCGC
R:
TGGCCCCAGCATTGTCTTTAG
Band lengths:
94-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]