RnoEX0079269 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116362585-116363134:-
Coord C1 exon
chr8:116363081-116363134
Coord A exon
chr8:116362788-116362960
Coord C2 exon
chr8:116362585-116362684
Length
173 bp
Sequences
Splice sites
3' ss Seq
TTGCCTTGACCTACTGCCAGGTT
3' ss Score
5.88
5' ss Seq
ATGGTATTC
5' ss Score
2.04
Exon sequences
Seq C1 exon
CTCCCAGAAACTGAGCTGAGTGTGCAGTCATCCCTTAGCCGTGTGGAGGGACAG
Seq A exon
GTTTCTGGGACTACCACCTGGGGCACCCTTCACCTTGAGACCCAGCAAAAGAGGGCCATCTCTACCTGCCCAACCCTTGCTCTCTTTCTGCTCATGCGGGGCCACTGTCTCCAGCCAGTTCCAGCTGCTTGTGCCGGTCACCCGATCCACCCTGTAGCCCTGCAAACTTTATG
Seq C2 exon
AAGGGTCAAGGTGAGAGACACCTTTGCAGAGTTCTTGGTGGAGAACGGGAAGGCAGCCGTGTCAGCCTCACAGACTTCTAGAACCTGAGAAGAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512_MULTIEX1-3/4=2-4
Average complexity
S*
Mappability confidence:
75%=75=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTGAGCTGAGTGTGCAGT
R:
TGAGCCTCTTCTCAGGTTCTAGA
Band lengths:
146-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]