RnoEX0079294 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116448491-116451117:-
Coord C1 exon
chr8:116450998-116451117
Coord A exon
chr8:116449933-116450019
Coord C2 exon
chr8:116448491-116448584
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCCCCACCCTTCCCCTGCAGTGC
3' ss Score
10.42
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
GGAGAGTGTGGGAACTTCGTCAGACTCATCCAGCCCTGGAACCGGACACACCTGTACGTGTGCGGGACCGGTGCCTACAACCCCATGTGCACCTATGTGAACCGTGGCCGTCGCTCACAG
Seq A exon
TGCCCTCAGGTTCTGAAAGCAGTTCCAGCTGGACTCTTGTCAGCCTCAGTGGGACCCCCAGCAGGCAAGAAATCCTGAAGCCACCAG
Seq C2 exon
GATTACATCTTCTACCTGGAGCCTGAGAAACTTGAGTCAGGGAAAGGCAAATGCCCATACGACCCCAAGCTGGACACGGCCTCAGCCCTCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(32.2=100)
A:
NO
C2:
PF0140314=Sema=FE(6.6=100)
Main Inclusion Isoform:
ENSRNOT00000024193fB13110
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTCAGACTCATCCAGCC
R:
TTGGGGTCGTATGGGCATTTG
Band lengths:
174-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]