RnoEX0079309 @ rn6
Exon Skipping
Gene
ENSRNOG00000019737 | Sema4a
Description
semaphorin 4A [Source:RGD Symbol;Acc:1304636]
Coordinates
chr2:187816510-187822997:-
Coord C1 exon
chr2:187822944-187822997
Coord A exon
chr2:187817381-187817625
Coord C2 exon
chr2:187816510-187816677
Length
245 bp
Sequences
Splice sites
3' ss Seq
CCACTTCCCCCCTCCACCAGTCT
3' ss Score
7.18
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACAGACTCTGCTGGAAGTTTCGGACGCCTGGGTTAGGGGTCTGTACTGCTGGGG
Seq A exon
TCTCCCCGCCCTGATCCACCAACTTCCGCCCAAGCCAGCCAGGATCTGTCACAACTCGAGGTAGAAATTCTGGTTTCCCTGGCCTGAAACCCACACTGGCTCTGGCAGGATGAGTGCCTGGAGGGCCGCGCTCCCATTCCAGCCAGGCTGAGCCTGCTTTCCATGCCCGGACCCCCTTCCTTGCCTTGGATGGCACCCTGATTCAGGGTTTGAACACAGGACTTCTCCGTGTGGCTGGCTCAAGG
Seq C2 exon
AACCATCTGGTGACTGTCTCCGGATGACCATGGCCCTACCATCCCTGGGCCAAGACCCCTGGAGTCTCCTGAGTGTTTTTTTCTTCCAACTGTTCCTGCTGCTGTCACTGCCACCAGCTTCCGGGACTGGTGGGCAGGGACCCGTGCCCAGAGTCAAGTACCATGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019737_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.122
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTGCTGGAAGTTTCGG
R:
CCGCATGGTACTTGACTCTGG
Band lengths:
220-465
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]