RnoEX0079326 @ rn6
Exon Skipping
Gene
ENSRNOG00000013679 | Sema4d
Description
semaphorin 4D [Source:RGD Symbol;Acc:1310554]
Coordinates
chr17:13531517-13534928:+
Coord C1 exon
chr17:13531517-13531632
Coord A exon
chr17:13534640-13534812
Coord C2 exon
chr17:13534885-13534928
Length
173 bp
Sequences
Splice sites
3' ss Seq
CGTCTGTCTCTCATGCACAGGGG
3' ss Score
8.85
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACCGGGGCGCTCTGCATAAAGCTGTCATCCTTGCAAAAGAGGTACACGTGGTTGAGGAGACCCAACTCTTCCAGGACTTCGAACCGGTCCTGTCTCTGCTGCTATCATCAAAGAAG
Seq A exon
GGGAGGAAGTTTGTCTATGCTGGCTCCAACTCAGGAGTGGTCCAAGCTCCCCTGGCCTTCTGCGGAAAGCACAGTAGCTGTGAAGACTGTGTGCTAGCACGGGACCCCTACTGCGCCTGGAGCCCAGCCATCAAGGCCTGTGTTACCTTGCACCAGGCAGAGGGCTCTAGCAG
Seq C2 exon
GGGCTGGATTCAGGACATGAGTGGCGACACGTCCTCGTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013679-'37-19,'37-18,38-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.078
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0143720=PSI=PU(71.7=65.5)
C2:
PF0143720=PSI=PD(26.4=87.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCTGCATAAAGCTGTCA
R:
GAGGACGTGTCGCCACTCAT
Band lengths:
146-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]