GgaEX1051657 @ galGal4
Exon Skipping
Gene
ENSGALG00000010697 | SEMA4D
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chrZ:43461793-43465610:-
Coord C1 exon
chrZ:43465495-43465610
Coord A exon
chrZ:43462070-43462242
Coord C2 exon
chrZ:43461793-43461836
Length
173 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTTGTTTGTTTTTAGAGC
3' ss Score
10.6
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATCAAGGGGCCCTGCACAAAGCTATCAGCTACGAAAATGGAATGCATATTATAGAAGAAACACAACTTTTCCCAAAGTTTGAGCCAGTTCAGACACTCTTACTTTCATCCAAAAAA
Seq A exon
AGCAGAAGATACCTCTACGCTGGTTCAAATTCTGGTGTGGTTCAGTCTCCTGTGGCATTCTGTGACATGTACACCACTTGTTTTGACTGTGTTTTAGCAAGGGATCCTTACTGTGCTTGGAAACCTCTTGAGGGTTCTTGCGTTGATATTTATCAAGAAAGTGAAACTGAAAG
Seq C2 exon
GAATTGGATTCAGAACATAGGTGGAGATGCATCTTCTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010697_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0143720=PSI=PU(57.6=65.5)
C2:
PF0143720=PSI=FE(22.7=100)
Main Skipping Isoform:
ENSGALT00000037939fB11780
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGGGGCCCTGCACAAA
R:
ACAAGAAGATGCATCTCCACCT
Band lengths:
156-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]