DreEX6099097 @ danRer10
Exon Skipping
Gene
ENSDARG00000024775 | si:ch211-129c21.1
Description
si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
Coordinates
chr22:22293587-22296599:-
Coord C1 exon
chr22:22296484-22296599
Coord A exon
chr22:22294794-22294957
Coord C2 exon
chr22:22293587-22293639
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACTTGTCTTGTTTGGTCTAGTTG
3' ss Score
7.87
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CAAACGGTTATGTGCAGAAAGCAGTGAATTATGATGGAGAAATGCACATCATTGAAGAGGTCAAACTGTTTGAGAGTGAAGAGGCTATTGACGTCCTCCGACTTCATCAGAATCAG
Seq A exon
TTGTATGCAGGCTCTGCATCCGGGGTCGTCCAGATGCCTGTCAGCAACTGCAGTCGCTATTCTTCCTGTCTGGACTGTGTGCTGGCCAGAGACCCATACTGTGCCTGGGACGTCCCAGCTCAACGCTGTTCTAGATTTCCCGCATCAACTGAGCATGCAAAAAG
Seq C2 exon
TAACCTGATACAAAGTCTTAAAGATGGAGATGCCACTCAGTGCCCAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000024775-'16-20,'16-18,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.8=100)
A:
PF0143720=PSI=PU(70.9=70.9)
C2:
PF0143720=PSI=PD(27.3=78.9),PF138951=Ig_2=PU(2.3=10.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACGGTTATGTGCAGAAAGC
R:
CTGTTATTGGGCACTGAGTGG
Band lengths:
169-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]