RnoEX0079572 @ rn6
Exon Skipping
Gene
ENSRNOG00000006545 | Sept7
Description
septin 7 [Source:RGD Symbol;Acc:620469]
Coordinates
chr8:26435846-26446145:+
Coord C1 exon
chr8:26435846-26435946
Coord A exon
chr8:26443086-26443151
Coord C2 exon
chr8:26446010-26446145
Length
66 bp
Sequences
Splice sites
3' ss Seq
AAACAGTTTTTCTATTTTAGACC
3' ss Score
7.3
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
ATTTCCCTGCTATCATGAGATTCTAATCTTTTGGAACCATAAGCCCAAAATAAACTCTTTAAGTTGCTTTGATCGTGATGTTTTGTCAAAACAACAGAAAA
Seq A exon
ACCCTCCTTTCTCTTACTTGTCTGCTCTGACTTGGACTTCCAGTGCTATTGTGCTCTGTACATGTG
Seq C2 exon
GTCTAAAGCGACTTCTTTATAGATACCATGCAACTATATAATGCTTTTTATCCATTTGACTCTGGAAAAATTCACATGTAAATGTTATGAAGAACTTGCACTATCCTGCTATTTGTTCTCTGGATATCTTGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006545-'10-13,'10-12,11-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGGAACCATAAGCCCAAA
R:
GCAGGATAGTGCAAGTTCTTCA
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]