RnoEX0079575 @ rn6
Exon Skipping
Gene
ENSRNOG00000006545 | Sept7
Description
septin 7 [Source:RGD Symbol;Acc:620469]
Coordinates
chr8:26434055-26447781:+
Coord C1 exon
chr8:26434055-26434157
Coord A exon
chr8:26435829-26435946
Coord C2 exon
chr8:26447675-26447781
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTCTCATCTTGCTGTTCCAGCTA
3' ss Score
9.12
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CAACCGAAGAACCTTGAGGGCTATGTGGGATTTGCCAACCTCCCAAATCAAGTGTACAGAAAATCGGTGAAAAGAGGATTTGAATTCACTCTTATGGTAGTAG
Seq A exon
CTATGCCTGCTGCCATGATTTCCCTGCTATCATGAGATTCTAATCTTTTGGAACCATAAGCCCAAAATAAACTCTTTAAGTTGCTTTGATCGTGATGTTTTGTCAAAACAACAGAAAA
Seq C2 exon
GTGAATCTGGACTGGGAAAGTCGACATTAATCAACTCATTATTCCTCACAGATTTGTATTCTCCAGAGTATCCAGGACCTTCTCATAGAATCAAAAAGACTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006545_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0073513=Septin=PU(3.6=28.6)
A:
NO
C2:
PF0073513=Septin=FE(12.6=100)
Main Inclusion Isoform:
ENSRNOT00000081574fB13152
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCGAAGAACCTTGAGGGC
R:
TCTTTTTGATTCTATGAGAAGGTCCT
Band lengths:
202-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]