RnoEX0079923 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39735069-39738667:-
Coord C1 exon
chr15:39738542-39738667
Coord A exon
chr15:39735834-39735922
Coord C2 exon
chr15:39735069-39735166
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTGGCTTCCTTTGGTTGAAGATG
3' ss Score
5.01
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTTATGTTTGAGAAAGCACAAGATGTCCTACATTCACTGAAACAGAAGATAAAAGATGGGTCTGCCACAAATGGAG
Seq A exon
ATGTAGAACTCTCAGCTCCTCTGCGCTATGCCTGCCTGCGTGCTGCCATGTTTCCTGCCGTGACGATAATGGACTGAACCTCTGAACCT
Seq C2 exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAGGTATGTTTATTCCTTACTCCAATCCTAGTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.110
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000074587fB13231
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAGACTTTCTGGATGGAGCT
R:
ACTGTTACTCAGAGTTGCTTCGT
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]