RnoINT0133868 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39735101-39738667:-
Coord C1 exon
chr15:39738542-39738667
Coord A exon
chr15:39735167-39738541
Coord C2 exon
chr15:39735101-39735166
Length
3375 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTCTCTCTCTCTCTCAACAGACT
3' ss Score
13.4
Exon sequences
Seq C1 exon
GTGATGCAAAGACTTTCTGGATGGAGCTACAAGATGATGGTAAAGTTGACTTTATGTTTGAGAAAGCACAAGATGTCCTACATTCACTGAAACAGAAGATAAAAGATGGGTCTGCCACAAATGGAG
Seq A exon
GTATGAAAAATGAACTAATGTTACATACTAGAAATGTATAATGCTACTGTTGTTTATTATAAACAACATGTAAGTGCTTTTCTAAGGCCCTAATGTGAATTCTGTATGCTTTATGATTATAAACTTGCTTTTCCCATATGTGGTGGTTTGTATACATACGCTTGGCTTAGGGAGTAGTAGCACTATTAGGTGATGGCCTTTTGGAGGAAATATGTCATGTGGGGGTGGGTTTTGAGACCTGCCTCCTAGCTTCCTGGGAGACAGTCCTGGCTTCCTTTGGTTGAAGATGTGGAACTCTCAGCTTTTCCAGTGCTATGCTTTCCTAGATGCTTTTGTGCTTCCTGACATGATGATAATGGACTGAACCTCAGAACCTGTAAGTTATCCCCAATTAAATGTTGTCCTTTATAAGAGCTGCCTTGGTCATGGTGTCTCTTCACAGCAATGGAACCCCTAACTAAGACAGAACTTGGAACCAAAGACTGGGGTATTGCTGTGATAGGTCTGGCTATGCTTTTGTTTGGAGGATGTGGACTTTGGGACTTTGGAAACCAGTAGAATGCTTTAAGTGGTGCTTAATGGGCCATATTAGTAGAAGCATGAAAGATAGTGTTCCTGTGTGTGTTTTGAACTGTGGGGACCAGCTCAAGAGGTTTCAGAGGAGAAGACCAAGTATGTGGCCTACAGACTGTTTTTGTGATATTTTGGTGAAGAATGTGGCTGCTTTTTGCTATTTTCTAAAAGAGTCTGACTGAGGCTAAGGTGAAGAGATTTAGATTAATTGCTTTGACAAAGGGAATCTCAAGACGGTCTGGTATAAATTCTGTTGTATAGTTACTAAAGTTCACTTTTATGAAGAACATTTTAATGAAAAGTAGCAAGCATACATAGGAAAATACAAAATATGGTTCAAAGACTGAAAAAAACACCAGGAATGAAACTAAATCCTTTGTTCAAGGATACTAAGTGGAATTAAAGGAGTGTTGACCTTCGGGTAAGATCTCACCAGCTAAACTAATGCTTTTGCAGTTGAAGAAGAGAGAGTTAAATCTAAGCATCATTATGATGTGGTTATTGTTTTCATTTGGACTTCTAATCTGAAATGAACTACAGTCCAGAAGTGGAGAGTACAACTGTGATCCAGACCCTGAGGCTAGAAGACACTGGTCCTAATCCTAAGGAATAGTGGCTATGAAAAACTTAGGCCCAGGTATGGTGTTACCCACCACCCAGGAGACAGAGGTAAGCAGACCTCTGAGTTCAAGGCCAGTCTGGGGCAGAGCAAGTTCCAAGATAACCAAGTTTAGGTAGTGAAGGAGTTGGAAAACAGAAAGCTGGTAATAGAACAAGGAGGCCATGTTCCAGTTCTCAGCAGCTTCGCCATGTAGCTCTGGTTTTAGAATCAAGAATAGGAGGAGACTACTGGGAAAGTCAATGATGCTGGTTAGCTGGAGCAAAGGGATTAGCAGTGATTAAGAAGAGACGACCGTCACTAAGAGGAAGTATTTTCTGAGAGTACAAAGAAGCTGTGTCCCAGAGACAACCAACATTGTACTTGGTACTTGGTAATGTGTAAAAGTCGCCTAGGTGGTACTGGTTTTGAAGGTATGAAGAGGTCATGGAGAGCAGTTGAGGCTTGGCACTGTGAGAGGCCAGGGAAGGACATATGTGAAGGTGCAGCTTCATTTGCAATTGATGGCCTAGGACTGAAGGGGTCATGTAAAGGAGTTGAAACTTTGCACTATAAAGGGAGCCTATGAGAGGCTGTTGGTGAAGCCTAGTTGCAGTGAGAAACCGCCAGCATGTTAGAAATGCCAGGAACATGGGATGACCACCACCAACAGCAGCAGCAGTGGAGTGGAGTCAGTCAGAGCCTACAGTATTACAGAGGGCAGAGCTGGAGATGGGACTCAATCCCTTTGCAGGAGCACAGAAGGTCATGTATGGATTCCAGACATTGGAACAAGAAGCTTTAAAGTTAAAATTGCCTTGGATACCTCACCAATGTTACAGATGTCAGAGCTGTGGGATACCTACTGAGGATCTGCTAACAGGGAGTGGAAACAGTCCAAGAGAGAGAAGTTTGTTGCAGTCAACAAAACAGAAAGGAGTTGGAGATCTGAAGACCACTTTGACATTAGACACAGAGATATAGAGTTTGGAGTTTGCCCAGTTAGGTTTTGGTCTTGCTTTTGTCCAGGATTTCCTATCTATATCCTTTTGGAATGGTAATGTATGTCCTGTGATGTTGGAGATAATGTGATCTGCTTTTTGACTTTGATTGTATAGGGGAATTACAGTTCAGCTATTGGATGAATCTCAGAAGAGACTTTGCACTTTTAAACATTGTTGAGACTGTGGTAGACTATTGGGATTTTTGAAGTTAGATTAAATGTATTTTTTATTATGCTATAGCTAGGTACGGCCCCCCAGAGACTCACGTGTTTGAACGAGCATATGGGGCCAGGGAGTGGAACGTGGTGGTTTGAATATGCTTGGCCCAGGAAGTGGCACTGTTAGGAGGTGTGACCTTGATGGAGGAAGTGTGTTACTGTGGGGGTGGACTTTGAGACCTTCCTTCTTGGAAGACAATCTGCTCCTGGCTTCCTTTGGTTGAAGATGTAGAACTCTCAGCTCCTCTGCGCTATGCCTGCCTGCGTGCTGCCATGTTTCCTGCCGTGACGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGCCCTTTATAAGAGCTGTCTTGGTCATGGTGTCTTTTCAAAGCAGTAGATCCCCTAACTAAGACACCATACACCCTATAAAAGTGGATAAACCTGAGTTTTGTAAATGATAGTTACTGAAGATCCCCTTTGCCTTGTGGCCTAGAACTCCTCTTAAGCACTGGCCTTAAGCACTCCTCCTCCTTTTAACCTCCCTTGGAGCTGAAATCAGGCTATGATTTTCTCCTTTGTTTATACTTTTTCCTTTTATACCTTCATACCTGAAGTGGAGGGGAAGACTATTACCTGCTTCTTGTATAATTTTAGCATAAATAGGAAAATCCAACAGAATTTTGTTTACTCCATTTAGACAACTGGTCTATATATGATCCATTAGTGGTAATACAACAGCATAAAAATTTCCTAAATAGCTGACTTCCAGGCCTCGTTTCCTTTGTCTCTGTCACAAATGATGATGGGGTCTTTCCAGAGAGGTATAAGATTCTATGTCAATTGTTTAGTATTGGAGTTTGGTAACCTGAATGGAAGTGATGATGATTGTGTTTATCTCCCCCTCTTTTCTCTCTGTCTCTGTCTCTGTCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACAG
Seq C2 exon
ACTATGTCCAAGCAATGGTTCTGGTAAACGAAGCAACTCTGAGTAACAGTCAGACACTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=NA C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]