HsaINT0148384 @ hg38
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr13:49460107-49461162:+
Coord C1 exon
chr13:49460107-49460232
Coord A exon
chr13:49460233-49461096
Coord C2 exon
chr13:49461097-49461162
Length
864 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TGTTTTTCTGTCTTTAACAGAAT
3' ss Score
11.74
Exon sequences
Seq C1 exon
GCGATGCAAAAACTTTCTGGATGGAGCTAGAAGATGATGGAAAAGTGGACTTCATTTTTGAACAAGTACAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACCAATAAAG
Seq A exon
GTATGAAGCAATAAAAACTTTGAATATGTTTAATACTAAATATTTCTCTCTGACAGTACAGTATCATTCTATTTCCAATATTGCTGTTTGTAAAAGTAGATGGATGTAATTACTTTTGAATAATACCTACTGAATTTCTTTTTATCTCAAGCTACTTTTTTCCCTCATTTATCTTTTTTTTTAGGGGAATGTTGCAAAAGTAACATCTGCTCATTATATAACATTTGGCACTTATAGAAAAATATAACAAGGAAAAATTATTCCACATTCAGAGACAACTAGTTTTTTCATATGTATGTGTAAAAGTACATATAACTTTATTTTGCCTGCTTTAAACAGAACTTACTCTACCAGTCTTCTGAAAGCAAAATTTGTGTTCTACATAGGCAGTTAGTTCAGTAATCCAAGTTTTTATTTTTTCTATTTGTTTGTTGTCAACCCTGGTTGGTTGTAGAACGTAAGACTTGAAGATGAAATCCTCCTTCAATCCATCAGGACATACGGTTTTGAAGCAAATTTTTCTCCAGATTATTTTTAGTACTTTCTGGATGGTCTTATGACATTATTATTATGTGTTTATCAAAAAAAATTGGCACTGTTTTTCATTTTAATCTTCCTTGTCAATCCTTCATGAGTCAGATAAATCTAGATTCTAATCCAGTTGTACTACTTCTTAGCTGAATGTCCTGGAATAAATAGCTTAACCTCTGAGCCTCAGTTTCTTTTGTCTCTAATGCAGATAGTCCTATTAACCTCTCAGAGGAATAGTGAAGATTAAATGAGATAAAATATGTAAATTGTTTAGCACAGTAGCTGGCACCATAAATAAAGGTAATGGTGATGCTGTTTTTCTGTCTTTAACAG
Seq C2 exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169:ENST00000354234:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=PU(48.8=97.7)
A:
NA
C2:
PF0109514=Pectinesterase=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains