BtaINT0131673 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19118147-19119689:+
Coord C1 exon
chr12:19118147-19118272
Coord A exon
chr12:19118273-19119623
Coord C2 exon
chr12:19119624-19119689
Length
1351 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TTTTTTCCCTTCCTTAACAGAAT
3' ss Score
11.37
Exon sequences
Seq C1 exon
GTGATGCAAAAAGTTTCTGGATGGAGCTGGAAGATGATGGGAAAGTGGATTTCATATTTGAACAAGTGCAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACAAATAAAG
Seq A exon
GTATGAAGCAATAAAAACTTTCAACACATTTAATGCTAAATATTACCCACTGGTAATACAGTTTAGTTCTAATTCCAGTATTGCTATTTGTTTTTAAAAGTCAAAATATTTTCTTTTGTTTTCTAAGAACCTAACATCAGTTCTGTTTGCTTTTTTTGTGTATATGCTCTGTTTCTATAAAAACTCATTTTTATACTATGAACACTTGTCGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGATCGCTAAGAGTTGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGATATGGCAACCCACTCCAGTGTTCTTGCCTGGAGGATCCCACGGATGAGGGAGGCTGGTGGGCTGCCGTCTGTGGAGTCACACAGAGTCGGACACGACTGAAGTGACTTAGCATAGCATAGCATGAACACTTGTAAAAGTGGATGAAGATGATTATTTTGAATAATAAATTATGAATAGATAAATAAATCTCTCTTTATTTCAGGCTACTTTTCTCTTCCTCACTTTATCTTTATGCGGGGGTGGAAGGGGTGTATTACAAAACTACTATGTGCTCCTTGTAGAACATTTGGTACATACAGAAAAATACAACAGATTATCCATCACCCAATCTTTCAGAGACAGCTTAGACATATATGGATATGTTTTGCCTGCTTTAAACAGCATTTGCGTTAGTAGTCTTCAGAGAGCAAACCTTGTATTTTACGTAGGCAGTCAGTTCAGTCATCCAGGTTTTTATTTTTTCTGTTTGTCTTCAGCCCAGGTAGTTGTAGAATATAGACTATTATATGGAAACTTCCTTCATTCCATCAGAATACATGATTTTCAAGCAAAATTTCCCCCCTCCTATTCTTTGTTTTCCCCAGGATGTTCTTAATTCTTTTTGGATATTCTATGACATTAATCTGTTGTGTGTTTGTCTACAAAATTAATACTGTCTTTCATTTTAATATTCTCATTCCTTCATGAATCTAATATATCTAGGTTTGAATTCACTTCTACCTCTTCCTATCTGATTGACCTGAAGTAAACAGTAAGCTACTAACCTCTAAGCTTCAATTTCTTTGTCTTTATTTATTTTTTTTTTAATTTCTTTTTTTTAAATTTCTTTGTCTTTAAAGTAGATACTCATAAAAACCTCTCAGAGGAGTTCCAAAGATTGAATGAGATAAAGTATGTGTCAGTGAATTGCATAGCACAGGAGCTGACATCTTGAATAAAGGTGATGCTGCTGCTGATTGTTTTCATTCTTTTTTCCCTTCCTTAACAG
Seq C2 exon
AATACATCCAAGCAATGATTCTAGTAAAAGATGCAATTATAAACCACAATTCAACATTGATAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCAAAAAGTTTCTGGATGGAGC
R:
CCTTTATCAATGTTGAATTGTGGTTT
Band lengths:
190-1541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development