HsaINT0148384 @ hg19
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50034243-50035298:+
Coord C1 exon
chr13:50034243-50034368
Coord A exon
chr13:50034369-50035232
Coord C2 exon
chr13:50035233-50035298
Length
864 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
TGTTTTTCTGTCTTTAACAGAAT
3' ss Score
11.74
Exon sequences
Seq C1 exon
GCGATGCAAAAACTTTCTGGATGGAGCTAGAAGATGATGGAAAAGTGGACTTCATTTTTGAACAAGTACAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACCAATAAAG
Seq A exon
GTATGAAGCAATAAAAACTTTGAATATGTTTAATACTAAATATTTCTCTCTGACAGTACAGTATCATTCTATTTCCAATATTGCTGTTTGTAAAAGTAGATGGATGTAATTACTTTTGAATAATACCTACTGAATTTCTTTTTATCTCAAGCTACTTTTTTCCCTCATTTATCTTTTTTTTTAGGGGAATGTTGCAAAAGTAACATCTGCTCATTATATAACATTTGGCACTTATAGAAAAATATAACAAGGAAAAATTATTCCACATTCAGAGACAACTAGTTTTTTCATATGTATGTGTAAAAGTACATATAACTTTATTTTGCCTGCTTTAAACAGAACTTACTCTACCAGTCTTCTGAAAGCAAAATTTGTGTTCTACATAGGCAGTTAGTTCAGTAATCCAAGTTTTTATTTTTTCTATTTGTTTGTTGTCAACCCTGGTTGGTTGTAGAACGTAAGACTTGAAGATGAAATCCTCCTTCAATCCATCAGGACATACGGTTTTGAAGCAAATTTTTCTCCAGATTATTTTTAGTACTTTCTGGATGGTCTTATGACATTATTATTATGTGTTTATCAAAAAAAATTGGCACTGTTTTTCATTTTAATCTTCCTTGTCAATCCTTCATGAGTCAGATAAATCTAGATTCTAATCCAGTTGTACTACTTCTTAGCTGAATGTCCTGGAATAAATAGCTTAACCTCTGAGCCTCAGTTTCTTTTGTCTCTAATGCAGATAGTCCTATTAACCTCTCAGAGGAATAGTGAAGATTAAATGAGATAAAATATGTAAATTGTTTAGCACAGTAGCTGGCACCATAAATAAAGGTAATGGTGATGCTGTTTTTCTGTCTTTAACAG
Seq C2 exon
AATACATCCAAGCAATGATTCTAGTGAATGAAGCAACTATAATTAACAGTTCAACATCAATAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-SETDB2:NM_001160308:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0109514=Pectinesterase=PU(50.6=97.7),PF0178512=Closter_coat=PU(44.0=76.7)
A:
NA
C2:
PF0109514=Pectinesterase=FE(26.5=100),PF0178512=Closter_coat=FE(29.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)