GgaINT0112300 @ galGal4
Intron Retention
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168507298-168508528:+
Coord C1 exon
chr1:168507298-168507420
Coord A exon
chr1:168507421-168508462
Coord C2 exon
chr1:168508463-168508528
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTTGTTTTGTTTCTACATAGAAT
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGATTTGAAGGCATTTTGGACGCAACTGGAAAGTAGAAGAGTGGATCTCATATTTGAGCAGGTGCAGGAAGTACTGCTGCTGCTAAAGGAAAAGATCAAGAATGGAACTGCCACAAATCAAG
Seq A exon
GTTTGAAATCCTTGTAACGATTCAGCAGGACTGCAATTATTTCATATTGAAGAAACCATTGTAACGTTAGCAGAAAAATTTAACAGCAACGTGTTATATGAATGTTCCTGATTTTTCATGGAACTAAATGTTCTTTATCTACATCTACAGTACACAGGTTTGGTTTTTATTTTACTAGTGTTTTAATTTATAAAAATATTTATTATTATTATTAAATCATCCATGTAAATCTAATCTGTACATCTCGCTGTTTCTGTGCAAGAAAATGTATAATGGCTTAAGATGCTTTTAAACTGATACAGCTACCCATTCTGCATTACAGTGCTTGTTCTAAATTGGTACTGCATTTTTGGGGGGTGAACTTGAGCTCCTTAATCTTGATGTTATGACAAAATGTTACAGAACTGCAGAGCTAAAGGTTGAATTTGAATCTCCAGGTATCGGTATGAATCTATGCCATACTTAAATTTGTATTTTCCTGTGTGTTGTTTTGTTCCAAACTAAAATACTAATGTGAATTTTACTGACATTTGTCTGCCAACTTGTAATATTTATTGCACAGGGCAACAGGTTGAGACAGAGTCACCTCTTCCTGTTCTTACTATCTGAAGACCGCATCCAGCAATTCAGGAGCAGCATTAATTTGCTCTGACAGGATCCTGTCCTTAGCCAGAAGATGGTTAGTCTGGTGACAGAAGCAAAGAGAGAATCTTGCACTGATTAATGTTTACACAAATTGCTGCCTCTGAAAACTACTGGACTTGTGTTGAAAATCATTCCAGCAGCTTTCTAAAAGCAAGAGGTTGTTCAGTTACTGATGTGAGCTGTGACTGTGTTGCTACTCCTAGGTGTGTCTATTAATGACTGTAGCAAAAAGTTAATTACAGTGTCAGTGTCGCAGTGCTCTATATTAGCACAGCCAGGGAACAAATGTGTCTAGAGCATAGCTTTCTTTTTCCTTCTAGCAATCTCTACTATCATTGTCCTTATTATTATTACTTATATTGCACTTCGTATCTGTTTTTGTTTTGTTTCTACATAG
Seq C2 exon
AATGCTGGCAGGCTTGGGCATTGGTGAACGAAGCTGATCTGGGTGATCTTTTAACGTTGACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006:ENSGALT00000027470:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGGCATTTTGGACGCA
R:
TTGTCAACGTTAAAAGATCACCCA
Band lengths:
182-1224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]