GgaINT0112300 @ galGal3
Intron Retention
Gene
ENSGALG00000017006 | F1N8V8_CHICK
Description
NA
Coordinates
chr1:173507907-173509113:+
Coord C1 exon
chr1:173507907-173508029
Coord A exon
chr1:173508030-173509071
Coord C2 exon
chr1:173509072-173509113
Length
1042 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
3' ss Seq
TTTGTTTTGTTTCTACATAGAAT
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTGATTTGAAGGCATTTTGGACGCAACTGGAAAGTAGAAGAGTGGATCTCATATTTGAGCAGGTGCAGGAAGTACTGCTGCTGCTAAAGGAAAAGATCAAGAATGGAACTGCCACAAATCAAG
Seq A exon
GTTTGAAATCCTTGTAACGATTCAGCAGGACTGCAATTATTTCATATTGAAGAAACCATTGTAACGTTAGCAGAAAAATTTAACAGCAACGTGTTATATGAATGTTCCTGATTTTTCATGGAACTAAATGTTCTTTATCTACATCTACAGTACACAGGTTTGGTTTTTATTTTACTAGTGTTTTAATTTATAAAAATATTTATTATTATTATTAAATCATCCATGTAAATCTAATCTGTACATCTCGCTGTTTCTGTGCAAGAAAATGTATAATGGCTTAAGATGCTTTTAAACTGATACAGCTACCCATTCTGCATTACAGTGCTTGTTCTAAATTGGTACTGCATTTTTGGGGGGTGAACTTGAGCTCCTTAATCTTGATGTTATGACAAAATGTTACAGAACTGCAGAGCTAAAGGTTGAATTTGAATCTCCAGGTATCGGTATGAATCTATGCCATACTTAAATTTGTATTTTCCTGTGTGTTGTTTTGTTCCAAACTAAAATACTAATGTGAATTTTACTGACATTTGTCTGCCAACTTGTAATATTTATTGCACAGGGCAACAGGTTGAGACAGAGTCACCTCTTCCTGTTCTTACTATCTGAAGACCGCATCCAGCAATTCAGGAGCAGCATTAATTTGCTCTGACAGGATCCTGTCCTTAGCCAGAAGATGGTTAGTCTGGTGACAGAAGCAAAGAGAGAATCTTGCACTGATTAATGTTTACACAAATTGCTGCCTCTGAAAACTACTGGACTTGTGTTGAAAATCATTCCAGCAGCTTTCTAAAAGCAAGAGGTTGTTCAGTTACTGATGTGAGCTGTGACTGTGTTGCTACTCCTAGGTGTGTCTATTAATGACTGTAGCAAAAAGTTAATTACAGTGTCAGTGTCGCAGTGCTCTATATTAGCACAGCCAGGGAACAAATGTGTCTAGAGCATAGCTTTCTTTTTCCTTCTAGCAATCTCTACTATCATTGTCCTTATTATTATTACTTATATTGCACTTCGTATCTGTTTTTGTTTTGTTTCTACATAG
Seq C2 exon
AATGCTGGCAGGCTTGGGCATTGGTGAACGAAGCTGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006:ENSGALT00000036477:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]