RnoEX0079929 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39723798-39725690:-
Coord C1 exon
chr15:39725574-39725690
Coord A exon
chr15:39725176-39725396
Coord C2 exon
chr15:39723798-39723967
Length
221 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTTTTTTTTCAGATC
3' ss Score
12.49
5' ss Seq
AAGGTTTCC
5' ss Score
-1.1
Exon sequences
Seq C1 exon
AAAAAAGTGTGCATGTCTTCAGTTGACAGCAAAGAATGCCAAAGCATGTCCCTTGTCACCTGACGGAGAATGTACTGGATATAAATATAAAAGACTGCAGAGACTCATACCTTCTGG
Seq A exon
ATCAAGTCTTTCACTGAGCCTGGAGCTTCCCACTTTGGATAGACTGTCTCTGCTGTCCGCCTGCGGCTGGAGCTACATATGTGCTCCATACCCAGCTTTTCTATGAGCTCTAGGGATCGAACTCAGGTCCTCATGCTTGAGTAACAAGCATTTTACCCACTGATCCATTCCCCCAGCCACTAAGAGGACTTTTTTTTTTGCTATGGTCTACAGTCTTAAAG
Seq C2 exon
CATTTATGAATGCAACCTGTTCTGCAAGTGTAACCGACAGATGTGTCAAAACCGCGTCATCCAGCATGGCCCCCGGGTGAGGCTGCAGGTGTTCAAAAGTGAGAAGAAGGGCTGGGGAGTGCGCTGCCTGGATGACATTGACAAAGGGACATTTGTGTGCATTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(34.2=100)
A:
PF0503311=Pre-SET=PD(18.6=61.1)
C2:
PF0503311=Pre-SET=PD(15.8=31.0),PF0085623=SET=PU(90.9=34.5)
Main Inclusion Isoform:
ENSRNOT00000074587fB13233
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGTGCATGTCTTCAGTTGAC
R:
CTGAATAAATGCACACAAATGTCCCT
Band lengths:
284-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]