RnoINT0133872 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39723798-39725690:-
Coord C1 exon
chr15:39725574-39725690
Coord A exon
chr15:39723968-39725573
Coord C2 exon
chr15:39723798-39723967
Length
1606 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CTTGTGTGTATTCCTGCCAGCAT
3' ss Score
5.98
Exon sequences
Seq C1 exon
AAAAAAGTGTGCATGTCTTCAGTTGACAGCAAAGAATGCCAAAGCATGTCCCTTGTCACCTGACGGAGAATGTACTGGATATAAATATAAAAGACTGCAGAGACTCATACCTTCTGG
Seq A exon
GTGAGGGGCCTTAGGACGTGCTGCAGGTTGTTTGTAACTATGAGGAATGTTGTTTTTTTACGTTATGTGCATGGGGGTGTGGTACCTGGGTCTGTGTGTGCACACGTGGAAGCCAGAGGTCGAGGCCAGGTGTCTCCCCCAGTCACTATCCACCTTATTTGTTTTTTTTTTTTTCAGATCAAGTCTTTCACTGAGCCTGGAGCTTCCCACTTTGGATAGACTGTCTCTGCTGTCCGCCTGCGGCTGGAGCTACATATGTGCTCCATACCCAGCTTTTCTATGAGCTCTAGGGATCGAACTCAGGTCCTCATGCTTGAGTAACAAGCATTTTACCCACTGATCCATTCCCCCAGCCACTAAGAGGACTTTTTTTTTTGCTATGGTCTACAGTCTTAAAGGTTTCCTTTATATTTGTTTCTAATACTGAACATCTAAATTATTAAGAAATGATAACCTGAAACCATTGTATATTAGGAATGGAAGCCGGTGACCACACACAAATTAGAGTATATTCAGATAACCACTCATCTGCTTCAGCTCTGGCTGTTCAGGAAATGAGTGACTGACTATCCCTTTTCCCATTAAAACATGTCTGCAGCATGTTCAAGGCAGAGGCTAAATGAGTGGTAGACCAGCCTGAGCTACAGGAAGAAGCTGTTTCAAAACCAAATGAAGGGGCTGAGGAACTAACTTGATGGGAAAGAGCATGAGGACCTGATGTAAAAAGCTATACATACCTGCCTGTCAGGGTAGTGCTCTTAGAGGCTGGAGATATATGGTCCCTGGGGCTGGCCTTCAGGCTCAGTGAAGGGATCCTTCTTGAGGGAATAAAGCAGAGACTAGTAGAACAGGCACCTGACCTTCTCTGGTGTCTGTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACACATGCATGAGCATGATCTCCCCCCACACACAATAATAACTGTAAAGATATATACTTATTAAAAGAAAAAGTGATTGAAAGATACTGACTTGACAGTTGATAATTATCAACTTATCGATTAATACTAAGAAATAGCACTAGTAGAACTAGAAGTGGAAGAGTTTGATCCTAGACATTTCCTTTACATATTTTAAAAGCTAACATTTACTATGTACTGAGCACCAGGATATATGTCTTGTAAATATTGACATATGGTTATTAATGAAACAGCCCCATAGGTTAAGCTCTGTTATATAAGCTTCTTGTTTGAGGTTGGAATGATGGCTCAGTGCTTGCTGTTCTTCTAAAGGACTCAAGTTCAAATCCTAGCACCCACATGAGCGTTCATATTCAGTTGTTATAACACTGGTCCCAGGGATTCAGTGCCCTCTTCAGTTTTCTGTGGGTACCAGGCAAGCACATGGTACAGTTATATACACAGGCAAAACACTCATACACAAATCATAAATAAAATAATTTCCATTTTAAAAATGGAGACTATAGCTAGTCAACCCAGGCGGTCTGACCTTACGTTTCCCCACTTCCCTCAGTCTCATTACTGGTTGAGTAAAGTAGCAATATGCACTTCATTTTGCTTTTAGACTATCTTATGACACCATCTTGTGTGTATTCCTGCCAG
Seq C2 exon
CATTTATGAATGCAACCTGTTCTGCAAGTGTAACCGACAGATGTGTCAAAACCGCGTCATCCAGCATGGCCCCCGGGTGAGGCTGCAGGTGTTCAAAAGTGAGAAGAAGGGCTGGGGAGTGCGCTGCCTGGATGACATTGACAAAGGGACATTTGTGTGCATTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(34.2=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(15.8=31.0),PF0085623=SET=PU(90.9=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTGTGCATGTCTTCAGTTGA
R:
CTGAATAAATGCACACAAATGTCCCT
Band lengths:
286-1892
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]