BtaINT0131677 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19132886-19136170:+
Coord C1 exon
chr12:19132886-19133002
Coord A exon
chr12:19133003-19136000
Coord C2 exon
chr12:19136001-19136170
Length
2998 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTGTATATTTTATTGACAAGCAT
3' ss Score
1.48
Exon sequences
Seq C1 exon
AACAAAATGTGCATGTCTTCAACTGACAGCAAGGAATGCCAAGACTTGCCCCTTGTCAAATAATAAAATAACCACTGGATATAAATATAAAAGACTAGAGAGACAGATACCTACTGG
Seq A exon
GTAAGATACGCTGTGGATTTGTTGCAGGGTGTTTATATCTTTGAAGGAGGGTGCTTTATCATTGTGGCCTATTTAGTCTTATAAATATTGTTGATGTGAGAGTTGGACTATAAAGAAAGTTGACTGCCGAAGAATTGATGCTTTTGAACTGTGGTGCTGAAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAATGAGATCAGTCCTGGGTGTTCATTGGAAGGGACTGATGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGGTTTGGGTGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGCGCGTGCTGCGATTCATAGGGTCGCAAAAAGTCGGACATGACTGAGCGACTGAACTGAACTGAATGCTTAATTTCTTATTTGTTGTTCTTGTTCAGTTGCTAAGTTGTTCCCGACTCTGCAACTCCATGGACTGCAGCACACTAGGCTCCCCTGTCCTTCACTGTCTCCCTGAGTTTGCTCAAATTCATATCCATTGAGTCGGTGATGCCATCCAACCATCTCAACCTCTGCTGCCCCCTTCTCCTTTTGCTTTCAGTCTTTCTCAGCGTCAGGATCTTTTCCATTGAGTTGGCTCTTTGCATTAGGTGGCCAAAGTATTGGAGCTTCAACTTCAGCATCAGTCCTCCCATTGAATATTGAGGGTTGATTTCCTTTAGGATTTGACTGGTTTGATCTCCTTGCAGTCCGAAGGACTCTCAAGTCTTCTCCAACACCACAATTCAAAGGCATCAATTCTTTGCCACAGTTCAAAAGCATCGGTTCTTCAGCCCTCAGCCTTCTTTATGGTCCACCTCTCACATCCATTCATGACTACTGGAAAAACCATAGCTTTGACTATACAGACTTCGTCGGCAGAGTGATGTCTGCTTTTTGATACACTGTCTAGGTTTTTCACAGCTTTCCTTTGAGGGAGAAAGTATCTTTTAATTTCATGACTGCAGTCACTGTCCACAGTGGTTTTGGAGCCCAAAAAAATAAAGCCTGTCAGTGTTGCCACTTTTTCCTCATCTGTTTGTCATGAAGTGATGGGACTAGATGCCATGATCTTTGTTGGGTTTTGAGTTTCAAGAGAGCTTTTTTTACTCTCCTCTTTCACCCTCATCAGGAGGCTCTTTAATTCCTCTTTGCTTTCTGCTTTTAAAGTTGTATCATCTGCATATCTGAGGTGGTTGGTATTTCACCTGGCATTCTTAATTCCTGCTGGTGACTCATCCAGCCTGACACTTCTCATGATATACTTCGCATATAAGTTAAATAAGCAGGGTGAAAATATACAGCCTTGATGTATTCCTTTCCCAATTTGAAACCAGTCCATTGTTCCATATCTGGTTCTAACTGTTGCTTCTTGATCTGCATACAGGTTTCTCAGGAGACAGGTTAGGTGATCTGGTATTCGCATCTCTTTAAGAATTTTCCACAGTTTGTCGTGATCCACACAGTCAAAGGCTTTGGTACAGTCAGTGAAGCAGAAGTAGATGTTTTTCTGGAATTCTCTTGCTTTCCGACAACAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAATCCAGCTTATACATCTGAAAGTTCTTGGTTCCTGTACTGCTGAAGCCTGACTTGAAGGATTTTGAGCGTTACCTTACTAGCATGTGAAACGAGTACATTTGTACAGTAGTTTGAACATTCTTTCGTATTGGCCTTCTTTGGGATTGGAATGAAAGCGGACCTTTTCTAGTCCTGTGGCACTGGCAAGTTTCCAAATTTGCTGACATATTAAGTGCAGCACTTTAACAGCATCATCTTTTAGGATTTTAAATAGTTCAGCTGGAATTAATTTCTTATACCAAAAATCTAAATTAAAGAATTTTTTTTAAAGCCTGTATATCATTTTTGGAAATGGAAGTCAGAGTGCACACATGTAACATGCAGACTGTACTTGACACTCATCTGCTTTTCCTCTGACTCTTACCCCTGTTGGGTTAGCTTACTTTGGGTAGACATTTCCCCATTAAGACATACACTGTGCAGAGGTCATCTGAGAATTGGGAATTTTCGTCTTTTCAAGGTGGTTATTGCTAAAAGACAAACAGAAAAGTATTCTTACTAGATTTTCCCTTCTTAGACATTGGGAGACATTTTAAAAGAGCTAACCCTTATTCTGTGCCAGGCATTGTCTCAAGCACCTTGTAAATACTGACTTATTTAATCTTTTTTTAAAATTAAATTTTATTGAAATGTAGTTGATTTCCATGTTGTGTTAGTTGTGGCTATACAGCAATGTGATTCAGTTATACATCTATCCACTTGTTTTTAGATTCTATTCCCATATAGGCCATTATAGAGTACTGAGTAGAGTTCCCGTGCTATACAATAGGTCCTTATTAGTTGTCTATTTTATATATAGCAGTGTGTATATGTCAACCCTGATTAACGATTTATCCCCTTCCCCCCTCAAATTTCCCCTGTGGTAACCTTAAGTCTGTTTTCTACATCTCTGACTCTATTTCTACTTTGTAAATAAGTTCATTTATACCATTTTCTTCGATTCCACATGTAAACAATATCAGGTGATACTTGTCTTTCTCTGTCTGACTTACCCAATTCATTTAATCTTCACAAAACCACCTTATGCCATATAATCCATATTGTATGGTAGTACCATATAATCCCCATTTTAAAAATGGAAGATTGAAGCACAAAGAGATTAAATCCATGGGCACACAGCTAGTGAGTGCTGGAGCTGTGATGGGAACTAGGCAGTCTAGCCCTGGGAGCCTTCACACTTAGTCTCTTTCCCTCAGTGATTATTAGCGAGGTAGCAATAGAAAGTGCTTTTGCTTTTAATTTGTCTAATTGATTTTCTCTTGTATATTTTATTGACAAG
Seq C2 exon
CATTTATGAATGCAGCCTATTATGCAAGTGTGATCGACGAATATGTCAAAACCGAGTTGTCCAGCATGGACCTCAAGTGAGGCTACAAGTGTTCAAAACTGAGAAGAAGGGATGGGGAGTGCGCTGTCTAGATGACATTGACAGAGGGACGTTTGTTTGCATTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(33.9=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(15.7=31.0),PF0085623=SET=PU(6.5=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development