RnoEX0081952 @ rn6
Exon Skipping
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10006314-10007662:+
Coord C1 exon
chr9:10006314-10006469
Coord A exon
chr9:10006886-10007096
Coord C2 exon
chr9:10007510-10007662
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGTGCACTGTGTACATGTAGTGC
3' ss Score
4.74
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTTCTGGACACAGGAGAGCAGCTGATGGTTCCTGGGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCCGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCTAGGGTGTACATGCAG
Seq A exon
TGCTACTGGAGGCCAGAAGAGGGCGGTGGATCCCACTAAACTGGAGTTACGACGGTTGGGAGCCACTGCGTGGGAGCTGGGAACAGACCAGCTTCCTCGGCAAGAGCTCCTCTTGCCCCCTGAGCCATCTTTCCAGCCACCAGCCCAGTGCTCTAAGCAATAGCTGTCCCACCAGTCGCCTTCTTGTCACATTTGACTTCCAGGCATCTCA
Seq C2 exon
GTATACTCCTCCAAAAGTAACTTCAGGCACCTGCTGAGTGGCCTGCGGAGCCTGGTCCAGGAGGGCGGTATCCGCTCACTCTGGCGGGGCAATGGTATAAACGTGCTCAAGATCGCCCCGGAGTACGCTATCAAGTTCTCTGTCTTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853-'6-2,'6-1,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.167 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=63.5)
A:
PF0015322=Mito_carr=PD(23.9=84.6)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
ENSRNOT00000074117fB13585
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGACACAGGAGAGCAG
R:
ACTTGATAGCGTACTCCGGGG
Band lengths:
292-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]