RnoINT0137044 @ rn6
Intron Retention
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10006314-10007662:+
Coord C1 exon
chr9:10006314-10006469
Coord A exon
chr9:10006470-10007509
Coord C2 exon
chr9:10007510-10007662
Length
1040 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
AGCCCCCTCTTCCTCCCCAGGTA
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTTCTGGACACAGGAGAGCAGCTGATGGTTCCTGGGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCCGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCTAGGGTGTACATGCAG
Seq A exon
GTTTGTCCACGGGGCTGGGACCCTTTGCAGGGACAATACAGATGGAGAGAGATGGAATTGATGGAACTCAAGATGGATTGGAACTAGACACAGAGCCCTCAAAAAGTTGTTGCTGAGGCTGAAGTTGCGGAAGATGGGGACAGGAAGTAGTCATGTTGGGGTTAGGCTTAGAGAACTCCAGGCACAGAGGCTAACAGGAGACTAGGTAGAAAGGTTTGGAGATCTGTGGGTTGTAGGTGGTGTCTTTGAGGTATTTGCTGGGAGTGGAAGAAACTGAAGATGGACCCCAAGGCTTCATGCATACCAGAGAAGCATTCACAGCTAAGCAAGGTTCCCAGACCTCCTTTCTTTTGAAAAAAAAAATGTTTTTGTTTTATATGTTTTTGACTGCACATCTGTGCACTGTGTACATGTAGTGCTACTGGAGGCCAGAAGAGGGCGGTGGATCCCACTAAACTGGAGTTACGACGGTTGGGAGCCACTGCGTGGGAGCTGGGAACAGACCAGCTTCCTCGGCAAGAGCTCCTCTTGCCCCCTGAGCCATCTTTCCAGCCACCAGCCCAGTGCTCTAAGCAATAGCTGTCCCACCAGTCGCCTTCTTGTCACATTTGACTTCCAGGCATCTCAGTAAGTAGCCCAGATAGTTCAGAAAGGACTTGAACTACAATATTCCTGACTCGCTCTCCTAAATAGTTGAGATCACAGACCAGCCTTGCCAGACCTGGCTACAGTGGAGGTCTTTAGGGAAATGTGAAGACTAAATAAATGGATCTACCTAGTCGCACAAGCCTCTGATGCCCAAGCTATTCCCGGGGCTGAAGCCGGAGGATCTCCACTTCAAGACCAGCTCAGACAATTTTAGTGACTTCTCAAAATATAAAATAAAAAGAGGGCTAGGGATGGCTCAGGGGTGGAACCCCCCAGTGAGGGGCTGGGGGCGTGGTCAGGGTGGAGCACCCGCCTAGAATCCCCCTTAGGTAAGGGGCTTGAGGAGGACACCTGGTTGGCTCTCAGGGCTGCAGCCCCCTCTTCCTCCCCAG
Seq C2 exon
GTATACTCCTCCAAAAGTAACTTCAGGCACCTGCTGAGTGGCCTGCGGAGCCTGGTCCAGGAGGGCGGTATCCGCTCACTCTGGCGGGGCAATGGTATAAACGTGCTCAAGATCGCCCCGGAGTACGCTATCAAGTTCTCTGTCTTTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853:ENSRNOT00000074117:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=63.5)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACAGGAGAGCAGCTGATG
R:
CTGCTCAAAGACAGAGAACTTGA
Band lengths:
303-1343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]