BtaINT0134641 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011912 | SLC25A25
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 (SLC25A25), mRNA. [Source:RefSeq mRNA;Acc:NM_001038145]
Coordinates
chr11:98755636-98757173:+
Coord C1 exon
chr11:98755636-98755794
Coord A exon
chr11:98755795-98757020
Coord C2 exon
chr11:98757021-98757173
Length
1226 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CCTCTTGTCCTTCCCCCCAGGTC
3' ss Score
13.31
Exon sequences
Seq C1 exon
ATCTTTGATGTGGGTGAGAATCTGACAGTCCCCGATGAGTTCACGGTGGAGGAGAGGCAGACGGGGATGTGGTGGAGGCACCTGGTGGCCGGCGGTGGGGCGGGGGCCGTATCGAGAACCTGCACGGCCCCCCTGGACAGACTCAAGGTGCTCATGCAG
Seq A exon
GTATGTGCGCAGGAAGACGGGCCCTGAGCCGCCTGTTTTCTCCTTGGGTTCTTTGGTCGGTGGCTTCCCTGCCCTTGTCTGGGGCCCTACTCTGGGCCCATACCTTTCTTAAGTCAGATTGGAGTTACTGCTCAGACCAGGGTGACATTAGATCCTGGCCCAGGTGACCTTTTGCGCATTGCTGATCTAATTTTATCTGAGGCTCTTAAGCCAGGAGTCACATTACAGGGCTGTAATGTGGGCAGCTGACCCCGGTGAGAACTGGGCTGTGGCAGGAACCTGTCGCCTTACGTACATCTTATGTAGACCACTGCATGGAGAGCTGTGCAAGCTGCTCCTTGCACCTGGCCCAGACACTAGTCCCCTGGCCGAGTGCCTGATTCCAAGTCCACAGGGCAGAGATAAGCCGAACGCACGTCAGGGGCAGGGTTGTGAAATCGACCTGCCTGAGGACACACCATTGGACTTCAGTGTCATCTGAACAGTGGCCAGTCACCCCCTTGTTCCCTGACTGGTGTTCTGGCATTTTTTAATGCCAGGAACCCTGCTCAGAAAAGGTGTCAGCCTTTCCCTGCCCTCCTTTCCCTGCCTTGGTTCAAGGCCTATGGACAGAAGAAGGTGCCAAATCAGAGAGATGGAGTGGTTTGGGCAGAGGAGCTCTGGGCCTGGGACCCGATCCGGGGTCCCACCCTCCCATCTGAGTGACCATGAGCACTTCTCTTCACTCCCAGGACTTCTATTCCTCTGGAAACTAAGAGGCTCGAACCAGTTGCATTGTCAGTTTGTTTTTCTTCCCCAAATCCCCAGGAATGCTGTAGAGATGAAAGGCTGTCCTTGGATGAAATGACTAAGGCTGGGAATGCATTCAATTAATGGGAGTAGGAGAGGGGTCATGGGTAGGGGGCACGTAGATTGGCTGGTCTGATGATGGTTGAACCTTATTATGGGTTCCTGGAAGCTCCTCTGTACTTTTATGTATGCTTGAAAGTTTTTCCGTAATAAAAAGTTCAATTTTTTTTTTAAGTAGTCCTCATGGAGGTGTAAGAGGTGTTTAGCATGGTGTTGGCATATAAACGTTGGGTGCACAGCCACATTTGACCCTCAGGGTGCTGAGTCGGTCTCAGGCACTGGAGGGCAGAGCCGTGCCTGCCGACCTCCCACCTTGGTAAAGGTCAGACGACGGCGGCTCGCTGTGGCTGCTCCCGACCTCTTGTCCTTCCCCCCAG
Seq C2 exon
GTCCACGCCTCCCGCAGCAACAACATGTGCATCGTGGGTGGGTTCACGCAGATGATTCGAGAAGGAGGGGCCCGATCACTCTGGCGGGGCAATGGCATCAACGTCCTCAAAATCGCCCCCGAGTCGGCCATCAAATTCATGGCCTACGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011912:ENSBTAT00000015802:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(35.1=62.3)
A:
NA
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGATGTGGGTGAGAATCTGAC
R:
TGCTCGTAGGCCATGAATTTGA
Band lengths:
310-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development